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    LOC114264549 cyclin-L1-1-like [ Camellia sinensis ]

    Gene ID: 114264549, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC114264549
    Gene description
    cyclin-L1-1-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Camellia sinensis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia
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    Genomic context

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    See LOC114264549 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    100 current AHAU_CSS_1 (GCF_004153795.1) Unplaced Scaffold NW_021025777.1 (4942338..4953598)

    NW_021025777.1Genomic Context describing neighboring genes Neighboring gene caldesmon-like Neighboring gene histone H2AX-like Neighboring gene cell division control protein 48 homolog C-like Neighboring gene uncharacterized LOC114264552

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_021025777 Unplaced Scaffold Reference AHAU_CSS_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcriptome and metabolite analysis identifies nitrogen utilization genes in tea plant (Camellia sinensis). Li W, et al. Sci Rep, 2017 May 10. PMID 28490757, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cyclin-dependent protein serine/threonine kinase regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cyclin-L1-1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Camellia sinensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference AHAU_CSS_1 Primary Assembly

    Genomic

    1. NW_021025777.1 Reference AHAU_CSS_1 Primary Assembly

      Range
      4942338..4953598
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028205221.1 → XP_028061022.1  cyclin-L1-1-like isoform X6

      Conserved Domains (1) summary
      COG5333
      Location:31 → 230
      CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

    2. XM_028205224.1 → XP_028061025.1  cyclin-L1-1-like isoform X9

      Conserved Domains (1) summary
      COG5333
      Location:31 → 230
      CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

    3. XM_028205220.1 → XP_028061021.1  cyclin-L1-1-like isoform X5

      Conserved Domains (1) summary
      COG5333
      Location:31 → 230
      CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

    4. XM_028205218.1 → XP_028061019.1  cyclin-L1-1-like isoform X3

      Conserved Domains (1) summary
      COG5333
      Location:31 → 230
      CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

    5. XM_028205219.1 → XP_028061020.1  cyclin-L1-1-like isoform X4

      Conserved Domains (1) summary
      COG5333
      Location:31 → 230
      CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

    6. XM_028205205.1 → XP_028061006.1  cyclin-L1-1-like isoform X1

      Conserved Domains (1) summary
      COG5333
      Location:31 → 230
      CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

    7. XM_028205223.1 → XP_028061024.1  cyclin-L1-1-like isoform X8

      Conserved Domains (1) summary
      COG5333
      Location:31 → 230
      CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

    8. XM_028205204.1 → XP_028061005.1  cyclin-L1-1-like isoform X1

      Conserved Domains (1) summary
      COG5333
      Location:31 → 230
      CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

    9. XM_028205208.1 → XP_028061009.1  cyclin-L1-1-like isoform X1

      Conserved Domains (1) summary
      COG5333
      Location:31 → 230
      CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

    10. XM_028205209.1 → XP_028061010.1  cyclin-L1-1-like isoform X1

      Conserved Domains (1) summary
      COG5333
      Location:31 → 230
      CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

    11. XM_028205211.1 → XP_028061012.1  cyclin-L1-1-like isoform X1

      Conserved Domains (1) summary
      COG5333
      Location:31 → 230
      CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

    12. XM_028205212.1 → XP_028061013.1  cyclin-L1-1-like isoform X1

      Conserved Domains (1) summary
      COG5333
      Location:31 → 230
      CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

    13. XM_028205206.1 → XP_028061007.1  cyclin-L1-1-like isoform X1

      Conserved Domains (1) summary
      COG5333
      Location:31 → 230
      CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

    14. XM_028205207.1 → XP_028061008.1  cyclin-L1-1-like isoform X1

      Conserved Domains (1) summary
      COG5333
      Location:31 → 230
      CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

    15. XM_028205210.1 → XP_028061011.1  cyclin-L1-1-like isoform X1

      Conserved Domains (1) summary
      COG5333
      Location:31 → 230
      CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

    16. XM_028205213.1 → XP_028061014.1  cyclin-L1-1-like isoform X1

      Conserved Domains (1) summary
      COG5333
      Location:31 → 230
      CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

    17. XM_028205222.1 → XP_028061023.1  cyclin-L1-1-like isoform X7

      Conserved Domains (1) summary
      COG5333
      Location:31 → 230
      CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

    18. XM_028205216.1 → XP_028061017.1  cyclin-L1-1-like isoform X2

      Conserved Domains (1) summary
      COG5333
      Location:31 → 230
      CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

    19. XM_028205215.1 → XP_028061016.1  cyclin-L1-1-like isoform X2

      Conserved Domains (1) summary
      COG5333
      Location:31 → 230
      CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

    20. XM_028205214.1 → XP_028061015.1  cyclin-L1-1-like isoform X2

      Conserved Domains (1) summary
      COG5333
      Location:31 → 230
      CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

    21. XM_028205225.1 → XP_028061026.1  cyclin-L1-1-like isoform X10

      Conserved Domains (1) summary
      COG5333
      Location:31 → 230
      CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
    Nucleotide Protein
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