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    LINC02901 long intergenic non-protein coding RNA 2901 [ Homo sapiens (human) ]

    Gene ID: 100130967, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC02901provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2901provided by HGNC
    Primary source
    HGNC:HGNC:21179
    See related
    Ensembl:ENSG00000203711 AllianceGenome:HGNC:21179
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C6orf99
    Expression
    Restricted expression toward testis (RPKM 17.6) See more
    Orthologs
    all
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    Genomic context

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    See LINC02901 in Genome Data Viewer
    Location:
    6q25.3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (158869814..158910353)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (160115224..160155759)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (159290846..159331385)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ezrin Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25368 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17744 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17745 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17746 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25369 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:159245802-159246776 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25370 Neighboring gene EZR antisense RNA 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:159256297-159256987 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:159256988-159257678 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:159273679-159274204 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:159274205-159274730 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:159274731-159275254 Neighboring gene uncharacterized LOC124901448 Neighboring gene oligosaccharyltransferase complex subunit pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25373 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:159275781-159276305 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:159276306-159276830 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:159289820-159290492 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:159290493-159291165 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:159291166-159291839 Neighboring gene MPRA-validated peak6275 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:159314985-159315685 Neighboring gene MPRA-validated peak6276 silencer Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:159331041-159331834 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:159331835-159332628 Neighboring gene YKT6 v-SNARE homolog (S. cerevisiae) pseudogene Neighboring gene RNA, U6 small nuclear 293, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. The DNA sequence and analysis of human chromosome 6. Mungall AJ, et al. Nature, 2003 Oct 23. PMID 14574404
    2. E3 ubiquitin ligase RNF123 targets lamin B1 and lamin-binding proteins. Khanna R, et al. FEBS J, 2018 Jun. PMID 29676528
    3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_160976.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL627422
      Related
      ENST00000795758.1

    2. NR_160977.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL627422
      Related
      ENST00000663340.2

    3. NR_160978.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL627422
      Related
      ENST00000486232.3

    4. NR_160979.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL627422
      Related
      ENST00000795786.1

    5. NR_160980.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL627422
      Related
      ENST00000666927.2

    6. NR_160981.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL627422
      Related
      ENST00000795762.1

    7. NR_160982.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL627422
      Related
      ENST00000795769.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      158869814..158910353
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      160115224..160155759
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001195032.1: Suppressed sequence

      Description
      NM_001195032.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.

    2. NM_001302839.1: Suppressed sequence

      Description
      NM_001302839.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.

    3. NM_001302840.1: Suppressed sequence

      Description
      NM_001302840.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.

    4. NM_001302841.1: Suppressed sequence

      Description
      NM_001302841.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.

    5. NM_001366493.1: Suppressed sequence

      Description
      NM_001366493.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.

    6. NM_001366494.1: Suppressed sequence

      Description
      NM_001366494.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.

    7. NM_001366495.1: Suppressed sequence

      Description
      NM_001366495.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q4VX62.1 GenPept UniProtKB/Swiss-Prot:Q4VX62

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