U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    LOC114773265 otoferlin-like [ Denticeps clupeoides (denticle herring) ]

    Gene ID: 114773265, updated on 21-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC114773265
    Gene description
    otoferlin-like
    See related
    Ensembl:ENSDCDG00000024741
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Denticeps clupeoides
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Denticipitoidei; Denticipitidae; Denticeps
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC114773265 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    47
    Annotation release Status Assembly Chr Location
    100 current fDenClu1.1 (GCF_900700375.1) Unplaced Scaffold NW_021629749.1 (53655..117858)

    NW_021629749.1Genomic Context describing neighboring genes Neighboring gene epidermal differentiation-specific protein-like Neighboring gene epidermal differentiation-specific protein-like Neighboring gene epidermal differentiation-specific protein-like Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_021629749 Unplaced Scaffold Reference fDenClu1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables AP-2 adaptor complex binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in plasma membrane organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synaptic vesicle priming IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in presynaptic active zone membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synaptic vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    LOW QUALITY PROTEIN: otoferlin-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Denticeps clupeoides Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fDenClu1.1

    Genomic

    1. NW_021629749.1 Reference fDenClu1.1

      Range
      53655..117858
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028965790.1 → XP_028821623.1  LOW QUALITY PROTEIN: otoferlin-like

      UniProtKB/TrEMBL
      A0A8C4AWS6
      Related
      ENSDCDP00000036914.1, ENSDCDT00000047238.1
      Conserved Domains (11) summary
      cd04011
      Location:257 → 367
      C2B_Ferlin; C2 domain second repeat in Ferlin
      cd04017
      Location:970 → 1107
      C2D_Ferlin; C2 domain fourth repeat in Ferlin
      cd04018
      Location:424 → 573
      C2C_Ferlin; C2 domain third repeat in Ferlin
      cd04037
      Location:1544 → 1670
      C2E_Ferlin; C2 domain fifth repeat in Ferlin
      cd08373
      Location:3 → 130
      C2A_Ferlin; C2 domain first repeat in Ferlin
      cd08374
      Location:1820 → 1953
      C2F_Ferlin; C2 domain sixth repeat in Ferlin
      COG5038
      Location:427 → 728
      COG5038; Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
      pfam16165
      Location:1963 → 2024
      Ferlin_C; Ferlin C-terminus
      pfam08150
      Location:853 → 927
      FerB; FerB (NUC096) domain
      pfam08151
      Location:366 → 416
      FerI; FerI (NUC094) domain
      cl14603
      Location:1177 → 1277
      C2; C2 domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases