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    FDY flagrante delicto Y [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 8674077, updated on 2-Nov-2024

    Summary

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    Official Symbol
    FDYprovided by FlyBase
    Official Full Name
    flagrante delicto Yprovided by FlyBase
    Primary source
    FLYBASE:FBgn0265047
    Locus tag
    Dmel_CG41503
    See related
    AllianceGenome:FB:FBgn0265047
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG41503; CR41503; Dmel\CG41503; fdy; Fdy
    Summary
    Predicted to enable RNA binding activity. Predicted to be active in cytoplasm and nucleus. Is expressed in testis. Orthologous to human SERBP1 (SERPINE1 mRNA binding protein 1) and HABP4 (hyaluronan binding protein 4). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See FDY in Genome Data Viewer
    Location:
    chromosome: Y
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) Y NC_024512.1 (3022289..3024026)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) YHet NW_001848860.1 (305269..307006)

    Chromosome Y - NC_024512.1Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Y chromosome as a target for acquired and amplified genetic material in evolution. Gvozdev VA, et al. Bioessays, 2005 Dec. PMID 16299764
    2. Birth of a new gene on the Y chromosome of Drosophila melanogaster. Carvalho AB, et al. Proc Natl Acad Sci U S A, 2015 Oct 6. PMID 26385968, Free PMC Article
    3. Drosophila melanogaster Y Chromosome Genes Affect Male Sensitivity to Microbial Infections. Bartolo G, et al. Insects, 2021 Jan 5. PMID 33466347, Free PMC Article
    4. Dissecting Fertility Functions of Drosophila Y Chromosome Genes with CRISPR. Hafezi Y, et al. Genetics, 2020 Apr. PMID 32098759, Free PMC Article
    5. Unique structure and positive selection promote the rapid divergence of Drosophila Y chromosomes. Chang CH, et al. Elife, 2022 Jan 6. PMID 34989337, Free PMC Article

    See all (26) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    • Annotated by Drosophila Heterochromatin Genome Project, Lawrence Berkeley National Lab, http://www.dhgp.org

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    flagrante delicto Y
    Names
    CG41503-PD
    CG41503-PE
    FDY-PD
    FDY-PE
    NP_001303579.2
    • sequencing error
    NP_001356913.1
    • sequencing error

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_024512.1 Reference assembly

      Range
      3022289..3024026
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001316650.1 → NP_001303579.2  flagrante delicto Y, isoform E, partial [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0H4CMP0, A0A0S0X2W5, D2A6L8
      Conserved Domains (2) summary
      PRK11634
      Location:308 → 368
      PRK11634; ATP-dependent RNA helicase DeaD; Provisional
      pfam04774
      Location:144 → 242
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family

    2. NM_001370012.1 → NP_001356913.1  flagrante delicto Y, isoform D, partial [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0H4CMP0, A0A0S0X2W5, D2A6L8
      Conserved Domains (2) summary
      PRK11634
      Location:308 → 368
      PRK11634; ATP-dependent RNA helicase DeaD; Provisional
      pfam04774
      Location:144 → 242
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    D2A6L8 D2A6L8

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