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    RPL23AP7 ribosomal protein L23a pseudogene 7 [ Homo sapiens (human) ]

    Gene ID: 118433, updated on 22-Oct-2024

    Summary

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    Official Symbol
    RPL23AP7provided by HGNC
    Official Full Name
    ribosomal protein L23a pseudogene 7provided by HGNC
    Primary source
    HGNC:HGNC:17336
    See related
    Ensembl:ENSG00000293106 AllianceGenome:HGNC:17336
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    RPL23AL1; bA395L14.9; RPL23A_6_267
    Expression
    Ubiquitous expression in fat (RPKM 9.7), brain (RPKM 8.2) and 25 other tissues See more
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    Genomic context

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    See RPL23AP7 in Genome Data Viewer
    Location:
    2q14.1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (113611239..113627138, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (114035969..114051866, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (114368816..114384715, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124907875 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:114340974-114341805 Neighboring gene WASP family homolog 2, pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:114349651-114350508 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:114354507-114355491 Neighboring gene uncharacterized LOC124907874 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11884 Neighboring gene DEAD/H-box helicase 11 like 2 (pseudogene) Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11885 Neighboring gene RAB, member of RAS oncogene family like 2A Neighboring gene uncharacterized LOC112268423 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:114413451-114414008 Neighboring gene SNRPA1 pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Nucleotide sequence of a cDNA clone (SUBT1) partly homologous to a human subtelomeric repeat sequence. Lagercrantz J, et al. Biochem Mol Biol Int, 1996 May. PMID 8799457
    2. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article
    3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    4. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • ribosomal protein L23a-like 1

    Clone Names

    • MGC104442

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_000029.3 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) uses an alternate splice site in its 5'-most exon and lacks an internal 5' exon, compared to variant 1.
      Source sequence(s)
      BC105600, BE464804, BX643196, DA484374, DA864496
      Related
      ENST00000802727.1

    2. NR_024528.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      BE464804, BG335018, BI464848, BX643196, DA484374, DA864496
      Related
      ENST00000802730.1

    3. NR_024529.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an internal 5' exon, compared to variant 1.
      Source sequence(s)
      BE464804, BI464848, BX643196, DA484374, DA864496
      Related
      ENST00000802729.1

    4. NR_024530.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) uses an alternate splice site in its 5'-most exon, lacks an internal 5' exon, and differs in the presence and absence of exons at its 3' end, compared to variant 1.
      Source sequence(s)
      AW340513, BI464848, BM661697, DA864496
      Related
      ENST00000802784.1

    5. NR_024531.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5) uses an alternate splice site in its 5'-most exon, lacks an internal 5' exon, and differs in the presence and absence of exons at its 3' end, compared to variant 1.
      Source sequence(s)
      AW340513, BM661697, DA864496
      Related
      ENST00000802849.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      113611239..113627138 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      114035969..114051866 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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