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    LOC108927556 RNA-binding Raly-like protein [ Scleropages formosus (Asian bonytongue) ]

    Gene ID: 108927556, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC108927556
    Gene description
    RNA-binding Raly-like protein
    See related
    Ensembl:ENSSFOG00015028157
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Scleropages formosus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Osteoglossocephala; Osteoglossomorpha; Osteoglossiformes; Osteoglossidae; Scleropages
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    Genomic context

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    See LOC108927556 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    101 current fSclFor1.1 (GCF_900964775.1) 19 NC_041824.1 (2253308..2373699)
    100 previous assembly ASM162426v1 (GCF_001624265.1) Unplaced Scaffold NW_017371593.1 (2329218..2450253)

    Chromosome 19 - NC_041824.1Genomic Context describing neighboring genes Neighboring gene sorting nexin-16-like Neighboring gene agouti related neuropeptide Neighboring gene carbonic anhydrase-like Neighboring gene ribosomal biogenesis factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA-binding Raly-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Scleropages formosus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fSclFor1.1 Primary Assembly

    Genomic

    1. NC_041824.1 Reference fSclFor1.1 Primary Assembly

      Range
      2253308..2373699
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018740952.2 → XP_018596468.1  RNA-binding Raly-like protein isoform X2

      UniProtKB/TrEMBL
      A0A1W4Z6Z6

    2. XM_018740950.2 → XP_018596466.1  RNA-binding Raly-like protein isoform X1

      UniProtKB/TrEMBL
      A0A1W4YY43

    3. XM_018740953.2 → XP_018596469.1  RNA-binding Raly-like protein isoform X3

      UniProtKB/TrEMBL
      A0A8C9U0F8
      Related
      ENSSFOP00015060662.1, ENSSFOT00015075401.1
      Conserved Domains (3) summary
      COG0724
      Location:12 → 160
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      pfam06386
      Location:198 → 268
      GvpL_GvpF; Gas vesicle synthesis protein GvpL/GvpF
      cl17169
      Location:20 → 88
      RRM_SF; RNA recognition motif (RRM) superfamily

    4. XM_018740951.1 → XP_018596467.1  RNA-binding Raly-like protein isoform X1

      UniProtKB/TrEMBL
      A0A1W4YY43

    5. XM_029246516.1 → XP_029102349.1  RNA-binding Raly-like protein isoform X3

      UniProtKB/TrEMBL
      A0A8C9U0F8
      Conserved Domains (3) summary
      COG0724
      Location:12 → 160
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      pfam06386
      Location:198 → 268
      GvpL_GvpF; Gas vesicle synthesis protein GvpL/GvpF
      cl17169
      Location:20 → 88
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version

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