U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    smpd2a sphingomyelin phosphodiesterase 2a [ Scleropages formosus (Asian bonytongue) ]

    Gene ID: 108939066, updated on 14-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    smpd2a
    Gene description
    sphingomyelin phosphodiesterase 2a
    See related
    Ensembl:ENSSFOG00015022890
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Scleropages formosus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Osteoglossocephala; Osteoglossomorpha; Osteoglossiformes; Osteoglossidae; Scleropages
    Also known as
    smpd2
    Orthologs
    zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See smpd2a in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    101 current fSclFor1.1 (GCF_900964775.1) 19 NC_041824.1 (19931247..19941828, complement)
    100 previous assembly ASM162426v1 (GCF_001624265.1) Unplaced Scaffold NW_017372100.1 (8448601..8461468, complement)

    Chromosome 19 - NC_041824.1Genomic Context describing neighboring genes Neighboring gene troponin T type 2a (cardiac) Neighboring gene plakophilin-1-like Neighboring gene TEA domain family member 3 a Neighboring gene TUB like protein 1a

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables sphingomyelin phosphodiesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    sphingomyelin phosphodiesterase 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Scleropages formosus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fSclFor1.1 Primary Assembly

    Genomic

    1. NC_041824.1 Reference fSclFor1.1 Primary Assembly

      Range
      19931247..19941828 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018760184.2 → XP_018615700.2  sphingomyelin phosphodiesterase 2

      UniProtKB/TrEMBL
      A0A0P7U8C5, A0A8C9VHA8
      Related
      ENSSFOP00015052458.1, ENSSFOT00015071188.1
      Conserved Domains (1) summary
      cl00490
      Location:29 → 297
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

    2. XM_018760185.2 → XP_018615701.2  sphingomyelin phosphodiesterase 2

      UniProtKB/TrEMBL
      A0A0P7U8C5, A0A8C9VHA8
      Conserved Domains (1) summary
      cl00490
      Location:29 → 297
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.