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    H2-T25 histocompatibility-2, T region locus 25 [ Mus musculus (house mouse) ]

    Gene ID: 630294, updated on 27-Nov-2024

    Summary

    Official Symbol
    H2-T25provided by MGI
    Official Full Name
    histocompatibility-2, T region locus 25provided by MGI
    Primary source
    MGI:MGI:1890744
    See related
    Ensembl:ENSMUSG00000092243
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    H2-t9; Gm7030
    Expression
    Broad expression in small intestine adult (RPKM 179.0), large intestine adult (RPKM 159.4) and 16 other tissues See more
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    Genomic context

    See H2-T25 in Genome Data Viewer
    Location:
    17 B1; 17 18.94 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (36438371..36440400, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (36127609..36129425, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_42486 Neighboring gene histocompatibility 2, T region locus, pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E10950 Neighboring gene ribosomal protein S6 pseudogene Neighboring gene histocompatibility 2, T region locus 10 Neighboring gene STARR-positive B cell enhancer ABC_E169 Neighboring gene histocompatibility 2, T region pseudogene Neighboring gene RIKEN cDNA 2410017I17 gene Neighboring gene predicted gene 10499 Neighboring gene histocompatibility 2, T region locus 26

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General protein information

    Preferred Names
    uncharacterized protein LOC630294
    Names
    MHC class Ib T9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001177467.2NP_001170938.1  uncharacterized protein LOC630294 precursor

      See identical proteins and their annotated locations for NP_001170938.1

      Status: VALIDATED

      Source sequence(s)
      CT030728
      Consensus CDS
      CCDS50101.1
      UniProtKB/TrEMBL
      E9PV42, E9Q5B3, Q0WXH6
      Related
      ENSMUSP00000133734.2, ENSMUST00000173322.8
      Conserved Domains (2) summary
      pfam00129
      Location:27198
      MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
      cd07698
      Location:205285
      IgC1_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain, alpha3 immunoglobulin domain; member of the C1-set of Ig superfamily (IgSF) domains

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      36438371..36440400 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)