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    EDI_195710 40S ribosomal protein S3-3, putative [ Entamoeba dispar SAW760 ]

    Gene ID: 5883963, updated on 17-May-2024

    Summary

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    Gene symbol
    EDI_195710
    Gene description
    40S ribosomal protein S3-3, putative
    Locus tag
    EDI_195710
    See related
    AmoebaDB:EDI_195710; VEuPathDB:EDI_195710
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Entamoeba dispar SAW760 (strain: SAW760)
    Lineage
    Eukaryota; Amoebozoa; Evosea; Archamoebae; Mastigamoebida; Entamoebidae; Entamoeba
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    Genomic context

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    See EDI_195710 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    1

    NW_001854823.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene DNA repair endonuclease xp-f / mei-9 / rad1, putative Neighboring gene pumilio, putative Neighboring gene long-chain-fatty-acid--CoA ligase, putative

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_001854823.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    40S ribosomal protein S3-3, putative
    XP_001738857.1
    • encoded by transcript EDI_195710A

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_001854823.1 Reference assembly

      Range
      11177..11911 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001738805.1 → XP_001738857.1  40S ribosomal protein S3-3, putative [Entamoeba dispar SAW760]

      See identical proteins and their annotated locations for XP_001738857.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      B0EL05
      Conserved Domains (3) summary
      cd02413
      Location:29 → 109
      40S_S3_KH; K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH ...
      PTZ00084
      Location:15 → 234
      PTZ00084; 40S ribosomal protein S3; Provisional
      pfam00189
      Location:119 → 200
      Ribosomal_S3_C; Ribosomal protein S3, C-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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