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    EDI_214490 40S ribosomal protein S13, putative [ Entamoeba dispar SAW760 ]

    Gene ID: 5886568, updated on 17-May-2024

    Summary

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    Gene symbol
    EDI_214490
    Gene description
    40S ribosomal protein S13, putative
    Locus tag
    EDI_214490
    See related
    AmoebaDB:EDI_214490; VEuPathDB:EDI_214490
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Entamoeba dispar SAW760 (strain: SAW760)
    Lineage
    Eukaryota; Amoebozoa; Evosea; Archamoebae; Mastigamoebida; Entamoebidae; Entamoeba
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    Genomic context

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    See EDI_214490 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    1

    NW_001855859.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L4, putative Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_001855859.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables small ribosomal subunit rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    40S ribosomal protein S13, putative
    XP_001741542.1
    • encoded by transcript EDI_214490A

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_001855859.1 Reference assembly

      Range
      11162..11608
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001741490.1 → XP_001741542.1  40S ribosomal protein S13, putative [Entamoeba dispar SAW760]

      See identical proteins and their annotated locations for XP_001741542.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      B0EC47
      Conserved Domains (3) summary
      PTZ00072
      Location:1 → 148
      PTZ00072; 40S ribosomal protein S13; Provisional
      cd00353
      Location:67 → 139
      Ribosomal_S15p_S13e; Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome. ...
      pfam08069
      Location:1 → 57
      Ribosomal_S13_N; Ribosomal S13/S15 N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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