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    Clec2l C-type lectin domain family 2, member L [ Rattus norvegicus (Norway rat) ]

    Gene ID: 296985, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Clec2lprovided by RGD
    Official Full Name
    C-type lectin domain family 2, member Lprovided by RGD
    Primary source
    RGD:1565373
    See related
    EnsemblRapid:ENSRNOG00000029644 AllianceGenome:RGD:1565373
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1565373
    Summary
    Predicted to enable carbohydrate binding activity. Predicted to be located in membrane. Orthologous to human CLEC2L (C-type lectin domain family 2 member L). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 406.4), Spleen (RPKM 99.1) and 7 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Clec2l in Genome Data Viewer
    Location:
    4q23
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (68359021..68381431)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (67392118..67414539)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (66404880..66421656)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene small nuclear ribonucleoprotein E-like Neighboring gene insulin-induced gene 1 protein-like Neighboring gene LUC7-like 2 pre-mRNA splicing factor Neighboring gene small nuclear ribonucleoprotein Sm D1-like Neighboring gene killer cell lectin like receptor G2 Neighboring gene homeodomain interacting protein kinase 2 Neighboring gene thromboxane A synthase 1 Neighboring gene small nucleolar RNA SNORA17

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    C-type lectin domain family 2 member L
    Names
    C-type lectin domain family, member L
    CD69-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001044233.2 → NP_001037698.2  C-type lectin domain family 2 member L

      See identical proteins and their annotated locations for NP_001037698.2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/Swiss-Prot
      Q0ZCA7
      UniProtKB/TrEMBL
      A6IES9
      Related
      ENSRNOP00000099071.1, ENSRNOT00000171496.1
      Conserved Domains (1) summary
      cd03593
      Location:97 → 207
      CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      68359021..68381431
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039107295.2 → XP_038963223.1  C-type lectin domain family 2 member L isoform X2

      Related
      ENSRNOP00000103793.1, ENSRNOT00000123376.1
      Conserved Domains (1) summary
      cd03593
      Location:53 → 163
      CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

    2. XM_017592533.3 → XP_017448022.1  C-type lectin domain family 2 member L isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0ZCA7.2 GenPept UniProtKB/Swiss-Prot:Q0ZCA7

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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