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    LOC115155055 telomerase-binding protein EST1A-like [ Salmo trutta (river trout) ]

    Gene ID: 115155055, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC115155055
    Gene description
    telomerase-binding protein EST1A-like
    See related
    Ensembl:ENSSTUG00000017784
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salmo trutta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    See LOC115155055 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current fSalTru1.1 (GCF_901001165.1) 19 NC_042975.1 (4502441..4541196)

    Chromosome 19 - NC_042975.1Genomic Context describing neighboring genes Neighboring gene reticulon-4 receptor-like 1 Neighboring gene uncharacterized LOC115153854 Neighboring gene globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like Neighboring gene U6 spliceosomal RNA Neighboring gene proline-rich extensin-like protein EPR1 Neighboring gene zinc finger protein 585B-like Neighboring gene zinc finger protein 665-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_042975.1 Chromosome 19 Reference fSalTru1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables telomerase RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables telomeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of telomerase holoenzyme complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    telomerase-binding protein EST1A-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fSalTru1.1 Primary Assembly

    Genomic

    1. NC_042975.1 Reference fSalTru1.1 Primary Assembly

      Range
      4502441..4541196
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029701848.1 → XP_029557708.1  telomerase-binding protein EST1A-like

      Related
      ENSSTUP00000042058.1, ENSSTUT00000043917.1
      Conserved Domains (5) summary
      PRK12678
      Location:413 → 540
      PRK12678; transcription termination factor Rho; Provisional
      sd00006
      Location:1033 → 1061
      TPR; TPR repeat [structural motif]
      cd09885
      Location:1509 → 1701
      PIN_Smg6-like; VapC-like PIN domain of human telomerase-binding protein EST1, Smg6, and other similar eukaryotic homologs
      pfam10373
      Location:1019 → 1338
      EST1_DNA_bind; Est1 DNA/RNA binding domain
      pfam10374
      Location:906 → 1011
      EST1; Telomerase activating protein Est1
    Nucleotide Protein
    Heading Accession and Version

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