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    ankfn1a ankyrin repeat and fibronectin type III domain containing 1a [ Salmo trutta (river trout) ]

    Gene ID: 115152692, updated on 24-Mar-2024

    Summary

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    Gene symbol
    ankfn1a
    Gene description
    ankyrin repeat and fibronectin type III domain containing 1a
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salmo trutta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
    Also known as
    ankfn1
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    human zebrafish all
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    Genomic context

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    See ankfn1a in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    100 current fSalTru1.1 (GCF_901001165.1) 18 NC_042974.1 (51623963..51856195)

    Chromosome 18 - NC_042974.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 100-like Neighboring gene HLF transcription factor, PAR bZIP family member b Neighboring gene chromobox protein homolog 2-like Neighboring gene noggin 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_042974.1 Chromosome 18 Reference fSalTru1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in establishment of mitotic spindle orientation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of establishment of bipolar cell polarity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in spindle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC115152692
    Names
    ankyrin repeat and fibronectin type III domain containing 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fSalTru1.1 Primary Assembly

    Genomic

    1. NC_042974.1 Reference fSalTru1.1 Primary Assembly

      Range
      51623963..51856195
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029697427.1 → XP_029553287.1  uncharacterized protein LOC115152692

      Conserved Domains (3) summary
      cd00063
      Location:534 → 621
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      sd00045
      Location:400 → 434
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:404 → 464
      Ank_2; Ankyrin repeats (3 copies)
    Nucleotide Protein
    Heading Accession and Version

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