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    LOC105419472 DDB1- and CUL4-associated factor 1-like [ Takifugu rubripes (torafugu) ]

    Gene ID: 105419472, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC105419472
    Gene description
    DDB1- and CUL4-associated factor 1-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Takifugu rubripes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
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    Genomic context

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    See LOC105419472 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    103 current fTakRub1.2 (GCF_901000725.2) 19 NC_042303.1 (19380758..19395063)
    101 previous assembly FUGU5 (GCF_000180615.1) Unplaced Scaffold NW_004075190.1 (2622..6686)

    Chromosome 19 - NC_042303.1Genomic Context describing neighboring genes Neighboring gene semaphorin-3D-like Neighboring gene semaphorin-3D-like Neighboring gene sphingomyelin phosphodiesterase 4 Neighboring gene dedicator of cytokinesis protein 3-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone H2AT120 kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear estrogen receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Cul4-RING E3 ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: DDB1- and CUL4-associated factor 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fTakRub1.2 Primary Assembly

    Genomic

    1. NC_042303.1 Reference fTakRub1.2 Primary Assembly

      Range
      19380758..19395063
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029826085.1 → XP_029681945.1  LOW QUALITY PROTEIN: DDB1- and CUL4-associated factor 1-like

      Conserved Domains (3) summary
      smart00667
      Location:823 → 855
      LisH; Lissencephaly type-1-like homology motif
      COG2319
      Location:1044 → 1354
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:1065 → 1101
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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