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    4921524L21Rik RIKEN cDNA 4921524L21 gene [ Mus musculus (house mouse) ]

    Gene ID: 70901, updated on 27-Nov-2024

    Summary

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    Official Symbol
    4921524L21Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4921524L21 geneprovided by MGI
    Primary source
    MGI:MGI:1918151
    See related
    Ensembl:ENSMUSG00000039540 AllianceGenome:MGI:1918151
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Restricted expression toward testis adult (RPKM 5.5) See more
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    Genomic context

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    See 4921524L21Rik in Genome Data Viewer
    Location:
    18 A1; 18 4.53 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (6603629..6638970)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (6603629..6638970)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene enhancer of polycomb homolog 1 Neighboring gene STARR-seq mESC enhancer starr_43717 Neighboring gene microRNA 1893 Neighboring gene STARR-seq mESC enhancer starr_43719 Neighboring gene charged multivesicular body protein 3 pseudogene Neighboring gene STARR-seq mESC enhancer starr_43721 Neighboring gene STARR-seq mESC enhancer starr_43722 Neighboring gene STARR-seq mESC enhancer starr_43723 Neighboring gene STARR-positive B cell enhancer ABC_E5647 Neighboring gene STARR-seq mESC enhancer starr_43725 Neighboring gene phosphoglycerate kinase 1 pseudogene Neighboring gene RAB18, member RAS oncogene family

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    ankyrin repeat domain-containing protein 26

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001362874.1 → NP_001349803.1  ankyrin repeat domain-containing protein 26 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC115302
      Consensus CDS
      CCDS89185.1
      UniProtKB/TrEMBL
      A0A3Q4EGB9, Q80W38
      Related
      ENSMUSP00000157133.2, ENSMUST00000234337.2
      Conserved Domains (1) summary
      pfam12001
      Location:79 → 129
      DUF3496; Domain of unknown function (DUF3496)

    2. NM_027598.2 → NP_081874.1  ankyrin repeat domain-containing protein 26 isoform 1

      See identical proteins and their annotated locations for NP_081874.1

      Status: VALIDATED

      Source sequence(s)
      AC115302
      Consensus CDS
      CCDS50216.1
      UniProtKB/TrEMBL
      Q80W38, Q9D5T2
      Related
      ENSMUSP00000035514.4, ENSMUST00000044829.5
      Conserved Domains (1) summary
      pfam12001
      Location:132 → 182
      DUF3496; Domain of unknown function (DUF3496)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      6603629..6638970
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006526244.2 → XP_006526307.1  ankyrin repeat domain-containing protein 26 isoform X1

      UniProtKB/TrEMBL
      Q80W38
      Conserved Domains (1) summary
      pfam12001
      Location:109 → 159
      DUF3496; Domain of unknown function (DUF3496)

    2. XM_006526245.3 → XP_006526308.1  ankyrin repeat domain-containing protein 26 isoform X2

      UniProtKB/TrEMBL
      Q80W38
      Conserved Domains (1) summary
      pfam12001
      Location:28 → 78
      DUF3496; Domain of unknown function (DUF3496)

    3. XM_011247002.2 → XP_011245304.1  ankyrin repeat domain-containing protein 26 isoform X3

      See identical proteins and their annotated locations for XP_011245304.1

      Conserved Domains (1) summary
      pfam12001
      Location:1 → 49
      DUF3496; Domain of unknown function (DUF3496)

    4. XM_011247003.2 → XP_011245305.1  ankyrin repeat domain-containing protein 26 isoform X3

      See identical proteins and their annotated locations for XP_011245305.1

      Conserved Domains (1) summary
      pfam12001
      Location:1 → 49
      DUF3496; Domain of unknown function (DUF3496)
    Nucleotide Protein Strain
    Heading Accession and Version

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