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    Parp11 poly (ADP-ribose) polymerase family, member 11 [ Mus musculus (house mouse) ]

    Gene ID: 101187, updated on 9-Dec-2024

    Summary

    Official Symbol
    Parp11provided by MGI
    Official Full Name
    poly (ADP-ribose) polymerase family, member 11provided by MGI
    Primary source
    MGI:MGI:2141505
    See related
    Ensembl:ENSMUSG00000037997 AllianceGenome:MGI:2141505
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    HIN1L; ARTD11; PARP-11; 5330431N24Rik
    Summary
    Predicted to enable NAD+-protein poly-ADP-ribosyltransferase activity. Acts upstream of or within nuclear envelope organization. Predicted to be located in cytosol; nuclear body; and nuclear envelope. Predicted to be part of nuclear pore. Predicted to be active in nucleus. Is expressed in several structures, including adrenal gland; alimentary system; nervous system; reproductive system; and thymus. Orthologous to human PARP11 (poly(ADP-ribose) polymerase family member 11). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Broad expression in whole brain E14.5 (RPKM 10.7), CNS E14 (RPKM 10.0) and 26 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Parp11 in Genome Data Viewer
    Location:
    6 F3; 6 62.39 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (127423803..127491200)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (127446830..127514233)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L22-like 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_17414 Neighboring gene predicted gene, 34091 Neighboring gene STARR-positive B cell enhancer ABC_E8132 Neighboring gene STARR-positive B cell enhancer ABC_E3683 Neighboring gene predicted gene, 34148 Neighboring gene STARR-seq mESC enhancer starr_17416 Neighboring gene STARR-positive B cell enhancer ABC_E2210 Neighboring gene STARR-positive B cell enhancer ABC_E9677 Neighboring gene calcium release activated channel regulator 2A Neighboring gene protein arginine N-methyltransferase 8 Neighboring gene predicted gene, 38900

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in mRNA transport IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within nuclear envelope organization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in protein auto-ADP-ribosylation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in protein auto-ADP-ribosylation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in spermatogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nuclear body IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nuclear body ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nuclear envelope ISO
    Inferred from Sequence Orthology
    more info
     
    part_of nuclear pore ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    protein mono-ADP-ribosyltransferase PARP11
    Names
    ADP-ribosyltransferase diphtheria toxin-like 11
    poly [ADP-ribose] polymerase 11
    NP_001333441.1
    NP_001333442.1
    NP_001349115.1
    NP_001349116.1
    NP_852067.1
    XP_006505294.1
    XP_006505295.1
    XP_006505296.1
    XP_006505297.1
    XP_017176774.1
    XP_017176775.1
    XP_030110895.1
    XP_030110897.1
    XP_030110898.1
    XP_030110899.1
    XP_030110900.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001346512.1NP_001333441.1  protein mono-ADP-ribosyltransferase PARP11 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) is shorter at the N-terminus compared to isoform 1. Variants 2 and 3 both encode the same isoform (2).
      Source sequence(s)
      AC121565, AK030559, BE135078, CF739218
      Consensus CDS
      CCDS85162.1
      UniProtKB/Swiss-Prot
      Q8CFF0
      UniProtKB/TrEMBL
      Q8BML7
      Conserved Domains (1) summary
      cd01439
      Location:111247
      TCCD_inducible_PARP_like; Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component ...
    2. NM_001346513.1NP_001333442.1  protein mono-ADP-ribosyltransferase PARP11 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) is shorter at the N-terminus compared to isoform 1. Variants 2 and 3 both encode the same isoform (2).
      Source sequence(s)
      AK151393, BE135078
      Consensus CDS
      CCDS85162.1
      UniProtKB/Swiss-Prot
      Q8CFF0
      Related
      ENSMUSP00000107810.2, ENSMUST00000112191.8
      Conserved Domains (1) summary
      cd01439
      Location:111247
      TCCD_inducible_PARP_like; Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component ...
    3. NM_001362186.1NP_001349115.1  protein mono-ADP-ribosyltransferase PARP11 isoform 3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) uses an alternate splice junction and lacks an alternate exon in the 5' end compared to variant 1. The resulting isoform (3) has a shorter and distinct N-terminus compared to isoform 1.
      Source sequence(s)
      AC121565, AC173480, CD349558
      Conserved Domains (1) summary
      cd01439
      Location:120256
      TCCD_inducible_PARP_like; Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component ...
    4. NM_001362187.1NP_001349116.1  protein mono-ADP-ribosyltransferase PARP11 isoform 4

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5) lacks an alternate exon in the 5' end and uses an alternate splice junction compared to variant 1. The resulting isoform (4) is shorter at the N-terminus compared to isoform 1.
      Source sequence(s)
      AC121565, AC173480
      UniProtKB/TrEMBL
      Q8BML7
      Conserved Domains (1) summary
      cd01439
      Location:77213
      TCCD_inducible_PARP_like; Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component ...
    5. NM_181402.4NP_852067.1  protein mono-ADP-ribosyltransferase PARP11 isoform 1

      See identical proteins and their annotated locations for NP_852067.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (1).
      Source sequence(s)
      AC121565, AC173480
      Consensus CDS
      CCDS20565.1
      UniProtKB/Swiss-Prot
      Q3UAF2, Q3UZR7, Q8CFF0
      Related
      ENSMUSP00000036127.6, ENSMUST00000039680.7
      Conserved Domains (2) summary
      smart00678
      Location:27107
      WWE; Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis
      cd01439
      Location:194330
      TCCD_inducible_PARP_like; Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component ...

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      127423803..127491200
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006505233.5XP_006505296.1  protein mono-ADP-ribosyltransferase PARP11 isoform X2

      See identical proteins and their annotated locations for XP_006505296.1

      UniProtKB/Swiss-Prot
      Q3UAF2, Q3UZR7, Q8CFF0
      Conserved Domains (2) summary
      smart00678
      Location:27107
      WWE; Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis
      cd01439
      Location:194330
      TCCD_inducible_PARP_like; Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component ...
    2. XM_006505232.5XP_006505295.1  protein mono-ADP-ribosyltransferase PARP11 isoform X2

      See identical proteins and their annotated locations for XP_006505295.1

      UniProtKB/Swiss-Prot
      Q3UAF2, Q3UZR7, Q8CFF0
      Conserved Domains (2) summary
      smart00678
      Location:27107
      WWE; Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis
      cd01439
      Location:194330
      TCCD_inducible_PARP_like; Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component ...
    3. XM_017321286.3XP_017176775.1  protein mono-ADP-ribosyltransferase PARP11 isoform X5

      Conserved Domains (2) summary
      smart00678
      Location:34114
      WWE; Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis
      pfam00644
      Location:147190
      PARP; Poly(ADP-ribose) polymerase catalytic domain
    4. XM_030255040.2XP_030110900.1  protein mono-ADP-ribosyltransferase PARP11 isoform X6

      Conserved Domains (2) summary
      smart00678
      Location:27107
      WWE; Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis
      pfam00644
      Location:140183
      PARP; Poly(ADP-ribose) polymerase catalytic domain
    5. XM_030255039.1XP_030110899.1  protein mono-ADP-ribosyltransferase PARP11 isoform X6

      Related
      ENSMUSP00000107812.2, ENSMUST00000112193.8
      Conserved Domains (2) summary
      smart00678
      Location:27107
      WWE; Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis
      pfam00644
      Location:140183
      PARP; Poly(ADP-ribose) polymerase catalytic domain
    6. XM_006505231.4XP_006505294.1  protein mono-ADP-ribosyltransferase PARP11 isoform X2

      See identical proteins and their annotated locations for XP_006505294.1

      UniProtKB/Swiss-Prot
      Q3UAF2, Q3UZR7, Q8CFF0
      Conserved Domains (2) summary
      smart00678
      Location:27107
      WWE; Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis
      cd01439
      Location:194330
      TCCD_inducible_PARP_like; Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component ...
    7. XM_017321285.3XP_017176774.1  protein mono-ADP-ribosyltransferase PARP11 isoform X1

      Conserved Domains (2) summary
      smart00678
      Location:34114
      WWE; Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis
      cd01439
      Location:201337
      TCCD_inducible_PARP_like; Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component ...
    8. XM_030255035.1XP_030110895.1  protein mono-ADP-ribosyltransferase PARP11 isoform X4

      UniProtKB/TrEMBL
      Q8BML7
      Conserved Domains (1) summary
      cd01439
      Location:77213
      TCCD_inducible_PARP_like; Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component ...
    9. XM_006505234.4XP_006505297.1  protein mono-ADP-ribosyltransferase PARP11 isoform X3

      See identical proteins and their annotated locations for XP_006505297.1

      Conserved Domains (1) summary
      cd01439
      Location:120256
      TCCD_inducible_PARP_like; Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component ...
    10. XM_030255037.1XP_030110897.1  protein mono-ADP-ribosyltransferase PARP11 isoform X4

      UniProtKB/TrEMBL
      Q8BML7
      Conserved Domains (1) summary
      cd01439
      Location:77213
      TCCD_inducible_PARP_like; Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component ...
    11. XM_030255038.1XP_030110898.1  protein mono-ADP-ribosyltransferase PARP11 isoform X4

      UniProtKB/TrEMBL
      Q8BML7
      Conserved Domains (1) summary
      cd01439
      Location:77213
      TCCD_inducible_PARP_like; Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component ...