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    Mamld1 mastermind-like domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 333639, updated on 27-Nov-2024

    Summary

    Official Symbol
    Mamld1provided by MGI
    Official Full Name
    mastermind-like domain containing 1provided by MGI
    Primary source
    MGI:MGI:3045303
    See related
    Ensembl:ENSMUSG00000059401 AllianceGenome:MGI:3045303
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    G630014P10Rik
    Summary
    Acts upstream of or within regulation of transcription by RNA polymerase II. Predicted to be located in Golgi apparatus; centrosome; and nucleoplasm. Predicted to be active in nuclear body. Is expressed in several structures, including diaphragm; nervous system; pancreas; reproductive system; and vertebral axis musculature. Human ortholog(s) of this gene implicated in hypospadias. Orthologous to human MAMLD1 (mastermind like domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in cerebellum adult (RPKM 5.8), ovary adult (RPKM 5.2) and 21 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Mamld1 in Genome Data Viewer
    Location:
    X A7.2; X 36.33 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (70093642..70199662)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (71050036..71156056)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene peptidylprolyl isomerase A pseudogene x_466.1 Neighboring gene predicted gene, 38595 Neighboring gene STARR-positive B cell enhancer ABC_E7692 Neighboring gene STARR-seq mESC enhancer starr_47322 Neighboring gene predicted gene 14730 Neighboring gene X-linked myotubular myopathy gene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 
    • Targeted (3)  1 citation

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in male gonad development IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within regulation of transcription by RNA polymerase II IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
     
    located_in centrosome ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nuclear body IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nuclear body IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nuclear body ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    mastermind-like domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081354.2NP_001074823.2  mastermind-like domain-containing protein 1 isoform 1

      See identical proteins and their annotated locations for NP_001074823.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AL731843, BY733469
      Consensus CDS
      CCDS57759.1
      UniProtKB/Swiss-Prot
      B1AW19, P0C6A2
      UniProtKB/TrEMBL
      B2RXP0
      Related
      ENSMUSP00000080737.4, ENSMUST00000082088.10
    2. NM_001256048.1NP_001242977.1  mastermind-like domain-containing protein 1 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an in-frame exon, compared to variant 1. The resulting protein (isoform 2) is shorter than isoform 1.
      Source sequence(s)
      AL731843, BY733469
      Consensus CDS
      CCDS57760.1
      UniProtKB/TrEMBL
      B2RXV1, D3Z768
      Related
      ENSMUSP00000110276.4, ENSMUST00000114629.4

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      70093642..70199662
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011247622.3XP_011245924.1  mastermind-like domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_011245924.1

      UniProtKB/Swiss-Prot
      B1AW19, P0C6A2
      UniProtKB/TrEMBL
      B2RXP0
    2. XM_036161995.1XP_036017888.1  mastermind-like domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      B2RXV1, D3Z768
    3. XM_017318531.2XP_017174020.1  mastermind-like domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A5F8MPR3
      Related
      ENSMUSP00000159081.2, ENSMUST00000239162.2

    RNA

    1. XR_001782752.2 RNA Sequence

    2. XR_004940345.1 RNA Sequence