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    rpac-40 DNA-directed RNA polymerase RpoA/D/Rpb3-type domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 178823, updated on 9-Dec-2024

    Summary

    Official Symbol
    rpac-40
    Official Full Name
    DNA-directed RNA polymerase RpoA/D/Rpb3-type domain-containing protein
    Primary source
    WormBase:WBGene00019275
    Locus tag
    CELE_H43I07.2
    See related
    AllianceGenome:WB:WBGene00019275
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable DNA-directed 5'-3' RNA polymerase activity and protein dimerization activity. Predicted to contribute to RNA polymerase I activity and RNA polymerase III activity. Predicted to be involved in transcription by RNA polymerase I and transcription by RNA polymerase III. Predicted to be part of RNA polymerase I complex and RNA polymerase III complex. Human ortholog(s) of this gene implicated in Treacher Collins syndrome 3 and hypomyelinating leukodystrophy 11. Orthologous to human POLR1C (RNA polymerase I and III subunit C). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See rpac-40 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    5
    Sequence:
    Chromosome: V; NC_003283.11 (4199485..4203696)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Aftiphilin clathrin-binding box domain-containing protein;Clathrin_bdg domain-containing protein;Transcription factor Neighboring gene Nuclear hormone receptor 114 Neighboring gene Dolichyl-phosphate beta-glucosyltransferase;dolichyl-phosphate beta-glucosyltransferase Neighboring gene OPA3-like protein;Peroxin-14 Neighboring gene Uncharacterized protein

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables DNA-directed 5'-3' RNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
     
    contributes_to RNA polymerase I activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    contributes_to RNA polymerase III activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in transcription by RNA polymerase I IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in transcription by RNA polymerase III IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    part_of DNA-directed RNA polymerase complex IEA
    Inferred from Electronic Annotation
    more info
     
    part_of RNA polymerase I complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of RNA polymerase III complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    DNA-directed RNA polymerase RpoA/D/Rpb3-type domain-containing protein
    NP_504166.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      4199485..4203696
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_071765.5NP_504166.2  DNA-directed RNA polymerase RpoA/D/Rpb3-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_504166.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9UAY9
      Conserved Domains (1) summary
      cd07032
      Location:54358
      RNAP_I_II_AC40; AC40 subunit of Eukaryotic RNA polymerase (RNAP) I and RNAP III