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    LOC115925106 synaptotagmin-5-like [ Strongylocentrotus purpuratus (purple sea urchin) ]

    Gene ID: 115925106, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC115925106
    Gene description
    synaptotagmin-5-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Strongylocentrotus purpuratus
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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    Genomic context

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    See LOC115925106 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145602.1 (21205235..21216819)

    NW_022145602.1Genomic Context describing neighboring genes Neighboring gene adhesion G-protein coupled receptor G2-like Neighboring gene uncharacterized LOC115925105 Neighboring gene uncharacterized LOC115925061 Neighboring gene adhesion G-protein coupled receptor G2-like Neighboring gene uncharacterized LOC115925062

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_022145602 Unplaced Scaffold Reference Spur_5.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium-dependent phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables clathrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylserine binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables syntaxin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium-ion regulated exocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cellular response to calcium ion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of calcium ion-dependent exocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of dopamine secretion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    synaptotagmin-5-like
    Names
    synaptotagmin-6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Spur_5.0 Primary Assembly

    Genomic

    1. NW_022145602.1 Reference Spur_5.0 Primary Assembly

      Range
      21205235..21216819
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030988302.1 → XP_030844162.1  synaptotagmin-5-like

      UniProtKB/TrEMBL
      A0A7M7NZT4
      Conserved Domains (2) summary
      cd00276
      Location:96 → 229
      C2B_Synaptotagmin; C2 domain second repeat present in Synaptotagmin
      cl14603
      Location:1 → 87
      C2; C2 domain
    Nucleotide Protein
    Heading Accession and Version

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