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    SEPMUDRAFT_89958 Vps53_N-domain-containing protein [ Sphaerulina musiva SO2202 ]

    Gene ID: 27907651, updated on 14-Dec-2023

    Summary

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    Gene symbol
    SEPMUDRAFT_89958
    Gene description
    Vps53_N-domain-containing protein
    Locus tag
    SEPMUDRAFT_89958
    Gene type
    protein coding
    RNA name
    Vps53_N-domain-containing protein
    RefSeq status
    PROVISIONAL
    Organism
    Sphaerulina musiva SO2202 (strain: SO2202)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Dothideomycetidae; Mycosphaerellales; Mycosphaerellaceae; Sphaerulina
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    Genomic context

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    See SEPMUDRAFT_89958 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    2

    NW_016017390.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene DUF1692-domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_016017390.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi. Ohm RA, et al. PLoS Pathog, 2012. PMID 23236275, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in retrograde transport, endosome to Golgi IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of GARP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Vps53_N-domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_016017390.1 Reference assembly

      Range
      1023434..1026070
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016910514.2 → XP_016758783.1  Vps53_N-domain-containing protein [Sphaerulina musiva SO2202]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      N1QFX6
      Conserved Domains (1) summary
      pfam04100
      Location:16 → 398
      Vps53_N; Vps53-like, N-terminal
    Protein Accession Links
    GenPept Link UniProtKB Link
    EMF10662.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases