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    LPP LIM domain containing preferred translocation partner in lipoma [ Chelonoidis abingdonii (Abingdon island giant tortoise) ]

    Gene ID: 116823023, updated on 18-Mar-2024

    Summary

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    Gene symbol
    LPP
    Gene description
    LIM domain containing preferred translocation partner in lipoma
    See related
    Ensembl:ENSCABG00000004965
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Chelonoidis abingdonii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Testudinidae; Chelonoidis
    Orthologs
    human mouse all
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    Genomic context

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    See LPP in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    100 current ASM359739v1 (GCF_003597395.1) Unplaced Scaffold NW_022641589.1 (1981043..2435702)

    NW_022641589.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116823022 Neighboring gene BCL6 transcription repressor Neighboring gene uncharacterized LOC116823024 Neighboring gene tumor protein p63 regulated 1 Neighboring gene uncharacterized LOC116823026 Neighboring gene tumor protein p63

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_022641589 Unplaced Scaffold Reference ASM359739v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in focal adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in stress fiber IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lipoma-preferred partner

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Chelonoidis abingdonii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM359739v1

    Genomic

    1. NW_022641589.1 Reference ASM359739v1

      Range
      1981043..2435702
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032777311.1 → XP_032633202.1  lipoma-preferred partner isoform X1

      UniProtKB/TrEMBL
      A0A8C0GC64
      Conserved Domains (4) summary
      cd09350
      Location:422 → 475
      LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09356
      Location:482 → 534
      LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09436
      Location:542 → 607
      LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      PHA03247
      Location:150 → 391
      PHA03247; large tegument protein UL36; Provisional

    2. XM_032777327.1 → XP_032633218.1  lipoma-preferred partner isoform X2

      Conserved Domains (4) summary
      cd09350
      Location:422 → 475
      LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09356
      Location:482 → 534
      LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      PHA03247
      Location:150 → 391
      PHA03247; large tegument protein UL36; Provisional
      cl02475
      Location:542 → 583
      LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

    3. XM_032777322.1 → XP_032633213.1  lipoma-preferred partner isoform X1

      UniProtKB/TrEMBL
      A0A8C0GC64
      Conserved Domains (4) summary
      cd09350
      Location:422 → 475
      LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09356
      Location:482 → 534
      LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09436
      Location:542 → 607
      LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      PHA03247
      Location:150 → 391
      PHA03247; large tegument protein UL36; Provisional

    4. XM_032777310.1 → XP_032633201.1  lipoma-preferred partner isoform X1

      UniProtKB/TrEMBL
      A0A8C0GC64
      Conserved Domains (4) summary
      cd09350
      Location:422 → 475
      LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09356
      Location:482 → 534
      LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09436
      Location:542 → 607
      LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      PHA03247
      Location:150 → 391
      PHA03247; large tegument protein UL36; Provisional

    5. XM_032777312.1 → XP_032633203.1  lipoma-preferred partner isoform X1

      UniProtKB/TrEMBL
      A0A8C0GC64
      Conserved Domains (4) summary
      cd09350
      Location:422 → 475
      LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09356
      Location:482 → 534
      LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09436
      Location:542 → 607
      LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      PHA03247
      Location:150 → 391
      PHA03247; large tegument protein UL36; Provisional

    6. XM_032777314.1 → XP_032633205.1  lipoma-preferred partner isoform X1

      UniProtKB/TrEMBL
      A0A8C0GC64
      Conserved Domains (4) summary
      cd09350
      Location:422 → 475
      LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09356
      Location:482 → 534
      LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09436
      Location:542 → 607
      LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      PHA03247
      Location:150 → 391
      PHA03247; large tegument protein UL36; Provisional

    7. XM_032777315.1 → XP_032633206.1  lipoma-preferred partner isoform X1

      UniProtKB/TrEMBL
      A0A8C0GC64
      Conserved Domains (4) summary
      cd09350
      Location:422 → 475
      LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09356
      Location:482 → 534
      LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09436
      Location:542 → 607
      LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      PHA03247
      Location:150 → 391
      PHA03247; large tegument protein UL36; Provisional

    8. XM_032777313.1 → XP_032633204.1  lipoma-preferred partner isoform X1

      UniProtKB/TrEMBL
      A0A8C0GC64
      Conserved Domains (4) summary
      cd09350
      Location:422 → 475
      LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09356
      Location:482 → 534
      LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09436
      Location:542 → 607
      LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      PHA03247
      Location:150 → 391
      PHA03247; large tegument protein UL36; Provisional

    9. XM_032777324.1 → XP_032633215.1  lipoma-preferred partner isoform X1

      UniProtKB/TrEMBL
      A0A8C0GC64
      Conserved Domains (4) summary
      cd09350
      Location:422 → 475
      LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09356
      Location:482 → 534
      LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09436
      Location:542 → 607
      LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      PHA03247
      Location:150 → 391
      PHA03247; large tegument protein UL36; Provisional

    10. XM_032777318.1 → XP_032633209.1  lipoma-preferred partner isoform X1

      UniProtKB/TrEMBL
      A0A8C0GC64
      Conserved Domains (4) summary
      cd09350
      Location:422 → 475
      LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09356
      Location:482 → 534
      LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09436
      Location:542 → 607
      LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      PHA03247
      Location:150 → 391
      PHA03247; large tegument protein UL36; Provisional

    11. XM_032777320.1 → XP_032633211.1  lipoma-preferred partner isoform X1

      UniProtKB/TrEMBL
      A0A8C0GC64
      Conserved Domains (4) summary
      cd09350
      Location:422 → 475
      LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09356
      Location:482 → 534
      LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09436
      Location:542 → 607
      LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      PHA03247
      Location:150 → 391
      PHA03247; large tegument protein UL36; Provisional

    12. XM_032777316.1 → XP_032633207.1  lipoma-preferred partner isoform X1

      UniProtKB/TrEMBL
      A0A8C0GC64
      Conserved Domains (4) summary
      cd09350
      Location:422 → 475
      LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09356
      Location:482 → 534
      LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09436
      Location:542 → 607
      LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      PHA03247
      Location:150 → 391
      PHA03247; large tegument protein UL36; Provisional

    13. XM_032777321.1 → XP_032633212.1  lipoma-preferred partner isoform X1

      UniProtKB/TrEMBL
      A0A8C0GC64
      Conserved Domains (4) summary
      cd09350
      Location:422 → 475
      LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09356
      Location:482 → 534
      LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09436
      Location:542 → 607
      LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      PHA03247
      Location:150 → 391
      PHA03247; large tegument protein UL36; Provisional

    14. XM_032777319.1 → XP_032633210.1  lipoma-preferred partner isoform X1

      UniProtKB/TrEMBL
      A0A8C0GC64
      Conserved Domains (4) summary
      cd09350
      Location:422 → 475
      LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09356
      Location:482 → 534
      LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09436
      Location:542 → 607
      LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      PHA03247
      Location:150 → 391
      PHA03247; large tegument protein UL36; Provisional

    15. XM_032777326.1 → XP_032633217.1  lipoma-preferred partner isoform X1

      UniProtKB/TrEMBL
      A0A8C0GC64
      Conserved Domains (4) summary
      cd09350
      Location:422 → 475
      LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09356
      Location:482 → 534
      LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09436
      Location:542 → 607
      LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      PHA03247
      Location:150 → 391
      PHA03247; large tegument protein UL36; Provisional

    16. XM_032777323.1 → XP_032633214.1  lipoma-preferred partner isoform X1

      UniProtKB/TrEMBL
      A0A8C0GC64
      Related
      ENSCABP00000006555.1, ENSCABT00000007161.1
      Conserved Domains (4) summary
      cd09350
      Location:422 → 475
      LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09356
      Location:482 → 534
      LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09436
      Location:542 → 607
      LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      PHA03247
      Location:150 → 391
      PHA03247; large tegument protein UL36; Provisional

    17. XM_032777325.1 → XP_032633216.1  lipoma-preferred partner isoform X1

      UniProtKB/TrEMBL
      A0A8C0GC64
      Conserved Domains (4) summary
      cd09350
      Location:422 → 475
      LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09356
      Location:482 → 534
      LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09436
      Location:542 → 607
      LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      PHA03247
      Location:150 → 391
      PHA03247; large tegument protein UL36; Provisional
    Nucleotide Protein
    Heading Accession and Version

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