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    TDRD7 tudor domain containing 7 [ Lontra canadensis (Northern American river otter) ]

    Gene ID: 116869421, updated on 18-Mar-2024

    Summary

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    Gene symbol
    TDRD7
    Gene description
    tudor domain containing 7
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lontra canadensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Lutrinae; Lontra
    Orthologs
    human mouse all
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    Genomic context

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    See TDRD7 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    100 current GSC_riverotter_1.0 (GCF_010015895.1) Unplaced Scaffold NW_022631013.1 (13987002..14061367)

    NW_022631013.1Genomic Context describing neighboring genes Neighboring gene insulin like growth factor binding protein like 1 Neighboring gene stimulated by retinoic acid gene 6 protein-like Neighboring gene coiled-coil domain containing 180 Neighboring gene tropomodulin 1 Neighboring gene uncharacterized LOC116869427 Neighboring gene thiosulfate sulfurtransferase like domain containing 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_022631013 Unplaced Scaffold Reference GSC_riverotter_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in lens fiber cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lens morphogenesis in camera-type eye IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spermatogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tudor domain-containing protein 7

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lontra canadensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GSC_riverotter_1.0

    Genomic

    1. NW_022631013.1 Reference GSC_riverotter_1.0

      Range
      13987002..14061367
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032860655.1 → XP_032716546.1  tudor domain-containing protein 7 isoform X1

      Conserved Domains (6) summary
      cd09973
      Location:234 → 300
      LOTUS_2_TDRD7; The second LOTUS domain on Tudor-containing protein 7 (TDRD7)
      cd09974
      Location:339 → 404
      LOTUS_3_TDRD7; The third LOTUS domain on Tudor-containing protein 7 (TDRD7)
      cd09986
      Location:5 → 91
      LOTUS_1_TDRD7; The first LOTUS domain on Tudor-containing protein 7 (TDRD7)
      cd20427
      Location:492 → 589
      Tudor_TDRD7_rpt1; first Tudor domain found in Tudor domain-containing protein 7 (TDRD7) and similar proteins
      cd20428
      Location:653 → 792
      Tudor_TDRD7_rpt2; second Tudor domain found in Tudor domain-containing protein 7 (TDRD7) and similar proteins
      cd20429
      Location:930 → 1020
      Tudor_TDRD7_rpt3; third Tudor domain found in Tudor domain-containing protein 7 (TDRD7) and similar proteins

    2. XM_032860658.1 → XP_032716549.1  tudor domain-containing protein 7 isoform X2

      Conserved Domains (6) summary
      cd09973
      Location:160 → 226
      LOTUS_2_TDRD7; The second LOTUS domain on Tudor-containing protein 7 (TDRD7)
      cd09974
      Location:265 → 330
      LOTUS_3_TDRD7; The third LOTUS domain on Tudor-containing protein 7 (TDRD7)
      cd20427
      Location:418 → 515
      Tudor_TDRD7_rpt1; first Tudor domain found in Tudor domain-containing protein 7 (TDRD7) and similar proteins
      cd20428
      Location:579 → 718
      Tudor_TDRD7_rpt2; second Tudor domain found in Tudor domain-containing protein 7 (TDRD7) and similar proteins
      cd20429
      Location:856 → 946
      Tudor_TDRD7_rpt3; third Tudor domain found in Tudor domain-containing protein 7 (TDRD7) and similar proteins
      cl14879
      Location:1 → 17
      LabA_like_C; C-terminal domain of LabA_like proteins

    3. XM_032860656.1 → XP_032716547.1  tudor domain-containing protein 7 isoform X2

      Conserved Domains (6) summary
      cd09973
      Location:160 → 226
      LOTUS_2_TDRD7; The second LOTUS domain on Tudor-containing protein 7 (TDRD7)
      cd09974
      Location:265 → 330
      LOTUS_3_TDRD7; The third LOTUS domain on Tudor-containing protein 7 (TDRD7)
      cd20427
      Location:418 → 515
      Tudor_TDRD7_rpt1; first Tudor domain found in Tudor domain-containing protein 7 (TDRD7) and similar proteins
      cd20428
      Location:579 → 718
      Tudor_TDRD7_rpt2; second Tudor domain found in Tudor domain-containing protein 7 (TDRD7) and similar proteins
      cd20429
      Location:856 → 946
      Tudor_TDRD7_rpt3; third Tudor domain found in Tudor domain-containing protein 7 (TDRD7) and similar proteins
      cl14879
      Location:1 → 17
      LabA_like_C; C-terminal domain of LabA_like proteins

    4. XM_032860657.1 → XP_032716548.1  tudor domain-containing protein 7 isoform X2

      Conserved Domains (6) summary
      cd09973
      Location:160 → 226
      LOTUS_2_TDRD7; The second LOTUS domain on Tudor-containing protein 7 (TDRD7)
      cd09974
      Location:265 → 330
      LOTUS_3_TDRD7; The third LOTUS domain on Tudor-containing protein 7 (TDRD7)
      cd20427
      Location:418 → 515
      Tudor_TDRD7_rpt1; first Tudor domain found in Tudor domain-containing protein 7 (TDRD7) and similar proteins
      cd20428
      Location:579 → 718
      Tudor_TDRD7_rpt2; second Tudor domain found in Tudor domain-containing protein 7 (TDRD7) and similar proteins
      cd20429
      Location:856 → 946
      Tudor_TDRD7_rpt3; third Tudor domain found in Tudor domain-containing protein 7 (TDRD7) and similar proteins
      cl14879
      Location:1 → 17
      LabA_like_C; C-terminal domain of LabA_like proteins
    Nucleotide Protein
    Heading Accession and Version

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