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    LOC116889592 RNA-binding motif protein, Y chromosome, family 1 member B-like [ Rattus rattus (black rat) ]

    Gene ID: 116889592, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC116889592
    Gene description
    RNA-binding motif protein, Y chromosome, family 1 member B-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus rattus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
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    Genomic context

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    See LOC116889592 in Genome Data Viewer
    Location:
    chromosome: Y
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current Rrattus_CSIRO_v1 (GCF_011064425.1) Y NC_046173.1 (1835960..1846362)

    Chromosome Y - NC_046173.1Genomic Context describing neighboring genes Neighboring gene lysine-specific demethylase 5D-like Neighboring gene sex-determining region Y protein-like Neighboring gene myosin regulatory light chain 12B-like Neighboring gene transcription factor E2F6-like Neighboring gene LIM domain-containing protein 2-like Neighboring gene 55 kDa erythrocyte membrane protein-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_046173.1 Chromosome Y Reference Rrattus_CSIRO_v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA-binding motif protein, Y chromosome, family 1 member B-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Rattus rattus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rrattus_CSIRO_v1 Primary Assembly

    Genomic

    1. NC_046173.1 Reference Rrattus_CSIRO_v1 Primary Assembly

      Range
      1835960..1846362
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032890528.1 → XP_032746419.1  RNA-binding motif protein, Y chromosome, family 1 member B-like

      Conserved Domains (2) summary
      TIGR01648
      Location:10 → 230
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
      cl17169
      Location:7 → 86
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version

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