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    clec-199 C-type lectin domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 183064, updated on 9-Dec-2024

    Summary

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    Official Symbol
    clec-199
    Official Full Name
    C-type lectin domain-containing protein
    Primary source
    WormBase:WBGene00007820
    Locus tag
    CELE_C30H6.1
    See related
    AllianceGenome:WB:WBGene00007820
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable carbohydrate binding activity and pattern recognition receptor activity. Predicted to be involved in immune response. Predicted to be active in external side of plasma membrane. Is expressed in head neurons and in male. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See clec-199 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    28
    Sequence:
    Chromosome: IV; NC_003282.8 (17351886..17358097)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene C-type lectin domain-containing protein Neighboring gene ncRNA Neighboring gene C-type lectin domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene C-type lectin domain-containing protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables carbohydrate binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables pattern recognition receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in immune response IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in external side of plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    C-type lectin domain-containing protein
    NP_001255942.1
    • Partially confirmed by transcript evidence
    NP_001255943.1
    • Partially confirmed by transcript evidence
    NP_001255944.1
    • Partially confirmed by transcript evidence
    NP_001255946.1
    • Partially confirmed by transcript evidence
    NP_001255947.1
    • Partially confirmed by transcript evidence
    NP_001299938.1
    • Partially confirmed by transcript evidence
    NP_001299939.1
    • Partially confirmed by transcript evidence
    NP_001299940.1
    • Partially confirmed by transcript evidence
    NP_001299941.1
    • Partially confirmed by transcript evidence
    NP_001299942.1
    • Partially confirmed by transcript evidence
    NP_001299943.1
    • Confirmed by transcript evidence
    NP_001299944.1
    • Confirmed by transcript evidence
    NP_001299945.1
    • Partially confirmed by transcript evidence
    NP_001299946.1
    • Partially confirmed by transcript evidence
    NP_001299947.1
    • Confirmed by transcript evidence
    NP_001299948.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      17351886..17358097
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001269017.2 → NP_001255946.1  C-type lectin domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001255946.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      C6KRM5
      Conserved Domains (1) summary
      smart00034
      Location:99 → 210
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)

    2. NM_001269013.3 → NP_001255942.1  C-type lectin domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001255942.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      D3KFV8
      Conserved Domains (1) summary
      smart00034
      Location:99 → 210
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)

    3. NM_001269014.3 → NP_001255943.1  C-type lectin domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001255943.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      D3KFV9
      Conserved Domains (1) summary
      smart00034
      Location:99 → 210
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)

    4. NM_001313009.3 → NP_001299938.1  C-type lectin domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3AS08
      Conserved Domains (1) summary
      smart00034
      Location:99 → 210
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)

    5. NM_001269015.3 → NP_001255944.1  C-type lectin domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001255944.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2L2E0
      Conserved Domains (1) summary
      smart00034
      Location:99 → 210
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)

    6. NM_001313010.3 → NP_001299939.1  C-type lectin domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3AUC7
      Conserved Domains (1) summary
      smart00034
      Location:99 → 210
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)

    7. NM_001313011.3 → NP_001299940.1  C-type lectin domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3ARH0
      Conserved Domains (1) summary
      smart00034
      Location:99 → 210
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)

    8. NM_001313012.3 → NP_001299941.1  C-type lectin domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3AV02
      Conserved Domains (1) summary
      smart00034
      Location:99 → 210
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)

    9. NM_001313013.3 → NP_001299942.1  C-type lectin domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3AXC2
      Conserved Domains (1) summary
      smart00034
      Location:99 → 210
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)

    10. NM_001269018.3 → NP_001255947.1  C-type lectin domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001255947.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      C6KRM6
      Conserved Domains (1) summary
      smart00034
      Location:99 → 210
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)

    11. NM_001313014.3 → NP_001299943.1  C-type lectin domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3AS12
      Conserved Domains (1) summary
      smart00034
      Location:99 → 210
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)

    12. NM_001313015.3 → NP_001299944.1  C-type lectin domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3AUD0
      Conserved Domains (1) summary
      smart00034
      Location:99 → 210
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)

    13. NM_001313016.3 → NP_001299945.1  C-type lectin domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3ARH5
      Conserved Domains (1) summary
      smart00034
      Location:99 → 210
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)

    14. NM_001313017.3 → NP_001299946.1  C-type lectin domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3AV10
      Conserved Domains (1) summary
      smart00034
      Location:99 → 210
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)

    15. NM_001313018.3 → NP_001299947.1  C-type lectin domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3AXC6
      Conserved Domains (1) summary
      smart00034
      Location:99 → 210
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)

    16. NM_001313019.3 → NP_001299948.1  C-type lectin domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3AS16
      Conserved Domains (1) summary
      smart00034
      Location:99 → 210
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    Nucleotide Protein
    Heading Accession and Version

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