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    polk polymerase (DNA directed) kappa [ Trematomus bernacchii (emerald rockcod) ]

    Gene ID: 117476082, updated on 19-Mar-2024

    Summary

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    Gene symbol
    polk
    Gene description
    polymerase (DNA directed) kappa
    See related
    EnsemblRapid:ENSTBNG00005013518
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Trematomus bernacchii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Trematomus
    Orthologs
    human zebrafish all
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    Genomic context

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    See polk in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    100 current fTreBer1.1 (GCF_902827165.1) Unplaced Scaffold NW_022988176.1 (1386348..1393967)

    NW_022988176.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol 4-phosphate 5-kinase type-1 beta-like Neighboring gene ceramide transfer protein-like Neighboring gene ankyrin repeat and death domain containing 1B Neighboring gene POC5 centriolar protein homolog (Chlamydomonas)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_022988176 Unplaced Scaffold Reference fTreBer1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-directed DNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables damaged DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in error-prone translesion synthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA polymerase kappa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Trematomus bernacchii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fTreBer1.1

    Genomic

    1. NW_022988176.1 Reference fTreBer1.1

      Range
      1386348..1393967
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034122455.1 → XP_033978346.1  DNA polymerase kappa

      Related
      ENSTBNP00005029209.1, ENSTBNT00005030342.1
      Conserved Domains (2) summary
      cd03586
      Location:102 → 503
      PolY_Pol_IV_kappa; DNA Polymerase IV/Kappa
      cl02765
      Location:637 → 662
      zf-WRNIP1_ubi; Werner helicase-interacting protein 1 ubiquitin-binding domain

    2. XM_034122454.1 → XP_033978345.1  DNA polymerase kappa

      Conserved Domains (2) summary
      cd03586
      Location:102 → 503
      PolY_Pol_IV_kappa; DNA Polymerase IV/Kappa
      cl02765
      Location:637 → 662
      zf-WRNIP1_ubi; Werner helicase-interacting protein 1 ubiquitin-binding domain
    Nucleotide Protein
    Heading Accession and Version

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