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    Oxr1 oxidation resistance 1 [ Arvicanthis niloticus (Nile rat) ]

    Gene ID: 117718516, updated on 19-Mar-2024

    Summary

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    Gene symbol
    Oxr1
    Gene description
    oxidation resistance 1
    See related
    EnsemblRapid:ENSANLG00005014627
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arvicanthis niloticus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Arvicanthis
    Orthologs
    human mouse all
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    Genomic context

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    See Oxr1 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    100 current mArvNil1.pat.X (GCF_011762505.1) 13 NC_047670.1 (20215831..20608842)

    Chromosome 13 - NC_047670.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein, FOG family member 2 Neighboring gene heterogeneous nuclear ribonucleoprotein F-like Neighboring gene small nucleolar RNA SNORA17 Neighboring gene actin binding Rho activating protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_047670.1 Chromosome 13 Reference mArvNil1.pat.X

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in response to oxidative stress IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    oxidation resistance protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arvicanthis niloticus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mArvNil1.pat.X

    Genomic

    1. NC_047670.1 Reference mArvNil1.pat.X

      Range
      20215831..20608842
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034516175.1 → XP_034372066.1  oxidation resistance protein 1 isoform X1

      Conserved Domains (2) summary
      smart00584
      Location:711 → 873
      TLDc; domain in TBC and LysM domain containing proteins
      pfam01476
      Location:100 → 142
      LysM; LysM domain

    2. XM_034516174.1 → XP_034372065.1  oxidation resistance protein 1 isoform X1

      Related
      ENSANLP00005018451.1, ENSANLT00005020886.1
      Conserved Domains (2) summary
      smart00584
      Location:711 → 873
      TLDc; domain in TBC and LysM domain containing proteins
      pfam01476
      Location:100 → 142
      LysM; LysM domain

    3. XM_034516177.1 → XP_034372068.1  oxidation resistance protein 1 isoform X3

      Conserved Domains (2) summary
      smart00584
      Location:684 → 846
      TLDc; domain in TBC and LysM domain containing proteins
      pfam01476
      Location:100 → 142
      LysM; LysM domain

    4. XM_034516178.1 → XP_034372069.1  oxidation resistance protein 1 isoform X3

      Related
      ENSANLP00005018455.1, ENSANLT00005020891.1
      Conserved Domains (2) summary
      smart00584
      Location:684 → 846
      TLDc; domain in TBC and LysM domain containing proteins
      pfam01476
      Location:100 → 142
      LysM; LysM domain

    5. XM_034516181.1 → XP_034372072.1  oxidation resistance protein 1 isoform X6

      Related
      ENSANLP00005018460.1, ENSANLT00005020897.1
      Conserved Domains (2) summary
      smart00584
      Location:642 → 804
      TLDc; domain in TBC and LysM domain containing proteins
      pfam01476
      Location:31 → 73
      LysM; LysM domain

    6. XM_034516180.1 → XP_034372071.1  oxidation resistance protein 1 isoform X5

      Related
      ENSANLP00005018471.1, ENSANLT00005020908.1
      Conserved Domains (2) summary
      smart00584
      Location:623 → 785
      TLDc; domain in TBC and LysM domain containing proteins
      pfam01476
      Location:12 → 54
      LysM; LysM domain

    7. XM_034516179.1 → XP_034372070.1  oxidation resistance protein 1 isoform X4

      Conserved Domains (2) summary
      smart00584
      Location:677 → 839
      TLDc; domain in TBC and LysM domain containing proteins
      pfam01476
      Location:93 → 135
      LysM; LysM domain

    8. XM_034516176.1 → XP_034372067.1  oxidation resistance protein 1 isoform X2

      Related
      ENSANLP00005018492.1, ENSANLT00005020933.1
      Conserved Domains (2) summary
      smart00584
      Location:704 → 866
      TLDc; domain in TBC and LysM domain containing proteins
      pfam01476
      Location:93 → 135
      LysM; LysM domain

    9. XM_034516183.1 → XP_034372074.1  oxidation resistance protein 1 isoform X8

      Related
      ENSANLP00005018527.1, ENSANLT00005020974.1
      Conserved Domains (1) summary
      smart00584
      Location:54 → 216
      TLDc; domain in TBC and LysM domain containing proteins

    10. XM_034516182.1 → XP_034372073.1  oxidation resistance protein 1 isoform X7

      Related
      ENSANLP00005018509.1, ENSANLT00005020951.1
      Conserved Domains (1) summary
      smart00584
      Location:81 → 243
      TLDc; domain in TBC and LysM domain containing proteins
    Nucleotide Protein
    Heading Accession and Version

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