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    LOC117733468 poly(rC)-binding protein 4-like [ Cyclopterus lumpus (lumpfish) ]

    Gene ID: 117733468, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC117733468
    Gene description
    poly(rC)-binding protein 4-like
    See related
    Ensembl:ENSCLMG00005009950
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cyclopterus lumpus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Cottales; Cyclopteridae; Cyclopterus
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    Genomic context

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    See LOC117733468 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    100 current fCycLum1.pri (GCF_009769545.1) 7 NC_046972.1 (22876923..22912038, complement)

    Chromosome 7 - NC_046972.1Genomic Context describing neighboring genes Neighboring gene DDB1- and CUL4-associated factor 1-like Neighboring gene dedicator of cytokinesis protein 3-like Neighboring gene dystroglycan-like Neighboring gene metabotropic glutamate receptor 7-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_046972.1 Chromosome 7 Reference fCycLum1.pri

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    poly(rC)-binding protein 4-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cyclopterus lumpus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fCycLum1.pri

    Genomic

    1. NC_046972.1 Reference fCycLum1.pri

      Range
      22876923..22912038 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034537144.1 → XP_034393035.1  poly(rC)-binding protein 4-like isoform X1

      UniProtKB/TrEMBL
      A0A8C2XL00
      Conserved Domains (3) summary
      cd22517
      Location:26 → 95
      KH-I_PCBP4_rpt1; first type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 4 (PCBP4) and similar proteins
      cd22523
      Location:283 → 349
      KH-I_PCBP4_rpt3; third type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 4 (PCBP4) and similar proteins
      cl00098
      Location:110 → 181
      KH-I; K homology (KH) RNA-binding domain, type I

    2. XM_034537145.1 → XP_034393036.1  poly(rC)-binding protein 4-like isoform X2

      UniProtKB/TrEMBL
      A0A8C2XL00
      Related
      ENSCLMP00005019860.1, ENSCLMT00005020888.1
      Conserved Domains (2) summary
      cd22523
      Location:197 → 263
      KH-I_PCBP4_rpt3; third type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 4 (PCBP4) and similar proteins
      cl00098
      Location:24 → 95
      KH-I; K homology (KH) RNA-binding domain, type I
    Nucleotide Protein
    Heading Accession and Version

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