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    xbx-5 X-BoX promoter element regulated [ Caenorhabditis elegans ]

    Gene ID: 188837, updated on 9-Dec-2024

    Summary

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    Official Symbol
    xbx-5
    Official Full Name
    X-BoX promoter element regulated
    Primary source
    WormBase:WBGene00011974
    Locus tag
    CELE_T24A11.2
    See related
    AllianceGenome:WB:WBGene00011974
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in membrane. Is expressed in gonad and neurons. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See xbx-5 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    5
    Sequence:
    Chromosome: III; NC_003281.10 (3801901..3804477, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Phosphatidylinositol-3,5-bisphosphate 3-phosphatase MTMR3 Neighboring gene ncRNA Neighboring gene Zinc metalloproteinase nas-26 Neighboring gene Chromosome condensation protein dpy-27

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of xbx genes in C. elegans. Efimenko E, et al. Development, 2005 Apr. PMID 15790967
    2. The C. elegans regulatory factor X (RFX) DAF-19M module: A shift from general ciliogenesis to cell-specific ciliary and behavioral specialization. Ahn S, et al. Cell Rep, 2022 Apr 12. PMID 35417689
    3. A global analysis of genetic interactions in Caenorhabditis elegans. Byrne AB, et al. J Biol, 2007. PMID 17897480, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    X-BoX promoter element regulated
    NP_497768.2
    • Product from WormBase gene class xbx;
      Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      3801901..3804477 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_065367.4 → NP_497768.2  X-BoX promoter element regulated [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_497768.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q22709
    Nucleotide Protein
    Heading Accession and Version

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