U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    K09A9.6 Aspartyl/asparaginy/proline hydroxylase domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 181645, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    K09A9.6
    Official Full Name
    Aspartyl/asparaginy/proline hydroxylase domain-containing protein
    Primary source
    WormBase:WBGene00010703
    Locus tag
    CELE_K09A9.6
    See related
    AllianceGenome:WB:WBGene00010703
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable peptidyl-aspartic acid 3-dioxygenase activity. Predicted to be involved in regulation of cytosolic calcium ion concentration. Predicted to be located in membrane. Predicted to be active in endoplasmic reticulum. Is expressed in anal depressor muscle; body wall musculature; nervous system; and reproductive system. Human ortholog(s) of this gene implicated in cholangiocarcinoma. Orthologous to human ASPH (aspartate beta-hydroxylase). [provided by Alliance of Genome Resources, Dec 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See K09A9.6 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    15
    Sequence:
    Chromosome: X; NC_003284.9 (15577242..15586811)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Dynamin Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene putative NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables peptidyl-aspartic acid 3-dioxygenase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables peptidyl-aspartic acid 3-dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in peptidyl-amino acid modification IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in peptidyl-aspartic acid hydroxylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of cytosolic calcium ion concentration IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Aspartyl/asparaginy/proline hydroxylase domain-containing protein
    NP_001123163.1
    • Confirmed by transcript evidence
    NP_510568.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      15577242..15586811
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_078167.7 → NP_510568.1  Aspartyl/asparaginy/proline hydroxylase domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_510568.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EEF4
      Conserved Domains (3) summary
      TIGR02917
      Location:461 → 634
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:597 → 628
      TPR; TPR repeat [structural motif]
      pfam05118
      Location:703 → 859
      Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

    2. NM_001129691.5 → NP_001123163.1  Aspartyl/asparaginy/proline hydroxylase domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001123163.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8WHT8
      Conserved Domains (3) summary
      TIGR02917
      Location:509 → 682
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:645 → 676
      TPR; TPR repeat [structural motif]
      pfam05118
      Location:751 → 907
      Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools