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    LSM12 LSM12 homolog [ Trachemys scripta elegans ]

    Gene ID: 117869250, updated on 19-Mar-2024

    Summary

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    Gene symbol
    LSM12
    Gene description
    LSM12 homolog
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Trachemys scripta elegans (sub-species: elegans)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Trachemys
    Orthologs
    human mouse all
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    Genomic context

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    See LSM12 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current CAS_Tse_1.0 (GCF_013100865.1) 23 NC_048320.1 (8903232..8920928)

    Chromosome 23 - NC_048320.1Genomic Context describing neighboring genes Neighboring gene homologous recombination factor with OB-fold Neighboring gene histone deacetylase 5 Neighboring gene glucose-6-phosphatase catalytic subunit 3 Neighboring gene slit homolog 2 protein-like Neighboring gene transmembrane protein 101

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_048320.1 Chromosome 23 Reference CAS_Tse_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Embryonic Transcriptome of the Red-Eared Slider Turtle (Trachemys scripta). Kaplinsky NJ, et al. PLoS One, 2013. PMID 23840449, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein LSM12 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Trachemys scripta elegans Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAS_Tse_1.0 Primary Assembly

    Genomic

    1. NC_048320.1 Reference CAS_Tse_1.0 Primary Assembly

      Range
      8903232..8920928
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034755937.1 → XP_034611828.1  protein LSM12 homolog

      Conserved Domains (2) summary
      cd01735
      Location:6 → 66
      LSm12_N; Like-Sm protein 12, N-terminal domain
      smart00995
      Location:77 → 164
      AD; Anticodon-binding domain
    Nucleotide Protein
    Heading Accession and Version

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