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    Or13c9 olfactory receptor family 13 subfamily C member 9 [ Mus musculus (house mouse) ]

    Gene ID: 258856, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Or13c9provided by MGI
    Official Full Name
    olfactory receptor family 13 subfamily C member 9provided by MGI
    Primary source
    MGI:MGI:3030105
    See related
    Ensembl:ENSMUSG00000082216 AllianceGenome:MGI:3030105
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Olfr271; MOR262-3; Olfr271-ps1
    Summary
    Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. An allelic polymorphism in this gene results in both coding and non-coding variants; the reference genome represents the non-coding allele. [provided by RefSeq, Apr 2024]
    Annotation information
    Note: Genetic polymorphisms result in both protein coding and non-coding alleles of this gene.
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    Genomic context

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    See Or13c9 in Genome Data Viewer
    Location:
    4 B2; 4 28.57 cM
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (52935430..52936381, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (52935430..52936381, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene chaperonin containing Tcp1, subunit 3 (gamma) pseudogene 1 Neighboring gene olfactory receptor family 13 subfamily C member 25 Neighboring gene predicted gene, 33479 Neighboring gene olfactory receptor family 13 subfamily D member 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The olfactory receptor gene superfamily of the mouse. Zhang X, et al. Nat Neurosci, 2002 Feb. PMID 11802173
    2. Different evolutionary processes shaped the mouse and human olfactory receptor gene families. Young JM, et al. Hum Mol Genet, 2002 Mar 1. PMID 11875048
    3. Odorant receptor expressed sequence tags demonstrate olfactory expression of over 400 genes, extensive alternate splicing and unequal expression levels. Young JM, et al. Genome Biol, 2003. PMID 14611657, Free PMC Article
    4. A unified nomenclature for vertebrate olfactory receptors. Olender T, et al. BMC Evol Biol, 2020 Apr 15. PMID 32295537, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    olfactory receptor family 13 subfamily C member 9
    Names
    GA_x6K02T2N78B-7060274-7061225
    olfactory receptor 271, pseudogene 1
    olfactory receptor MOR262-3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001429818.1 → NP_001416747.1  olfactory receptor family 13 subfamily C member 9

      Status: VALIDATED

      Description
      Transcript Variant: This variant (coding) represents the functional allele that is not present in some strains, including the strain of the reference genome.
      Source sequence(s)
      OW971639

    RNA

    1. NR_190799.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (non-coding) has an indel that introduces a frameshift and premature stop codon. It represents the non-functional allele present in some strains, including the strain of the reference genome.
      Source sequence(s)
      AL772397

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      52935430..52936381 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_003247.2: Suppressed sequence

      Description
      NG_003247.2: This RefSeq was removed by NCBI staff.

    2. NM_146857.1: Suppressed sequence

      Description
      NM_146857.1: This RefSeq record was removed by NCBI staff. Contact [email protected] for further information.
    Nucleotide Protein
    Heading Accession and Version

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