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    CAPNS1 calpain small subunit 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

    Gene ID: 100396389, updated on 8-Mar-2024

    Summary

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    Gene symbol
    CAPNS1
    Gene description
    calpain small subunit 1
    See related
    Ensembl:ENSCJAG00000009594
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callithrix jacchus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
    Orthologs
    human mouse all
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    Genomic context

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    See CAPNS1 in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 22 NC_071463.1 (30831392..30844410)
    105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 22 NC_048404.1 (32231767..32244785)

    Chromosome 22 - NC_071463.1Genomic Context describing neighboring genes Neighboring gene guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5-like Neighboring gene uncharacterized LOC128930537 Neighboring gene cytochrome c oxidase subunit 7A1, mitochondrial Neighboring gene zinc finger protein 565 Neighboring gene zinc finger protein 146

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calpain small subunit 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCalJa1.2.pat.X

    Genomic

    1. NC_071463.1 Reference mCalJa1.2.pat.X

      Range
      30831392..30844410
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008987793.3 → XP_008986041.1  calpain small subunit 1 isoform X1

      See identical proteins and their annotated locations for XP_008986041.1

      UniProtKB/TrEMBL
      A0A5K1VSZ4
      Related
      ENSCJAP00000017603.2
      Conserved Domains (1) summary
      cl08302
      Location:149 → 199
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

    2. XM_002762038.5 → XP_002762084.1  calpain small subunit 1 isoform X1

      See identical proteins and their annotated locations for XP_002762084.1

      UniProtKB/TrEMBL
      A0A5K1VSZ4
      Related
      ENSCJAP00000017600.2
      Conserved Domains (1) summary
      cl08302
      Location:149 → 199
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

    3. XM_035284897.1 → XP_035140788.1  calpain small subunit 1 isoform X2

      Conserved Domains (1) summary
      cd16188
      Location:38 → 206
      EFh_PEF_CPNS1_2; Penta-EF hand, calcium binding motifs, found in calcium-dependent protease small subunit CAPNS1 and CAPNS2
    Nucleotide Protein
    Heading Accession and Version

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