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    LOC118422416 protein SON-like [ Branchiostoma floridae (Florida lancelet) ]

    Gene ID: 118422416, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC118422416
    Gene description
    protein SON-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Branchiostoma floridae
    Lineage
    Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes; Branchiostomatidae; Branchiostoma
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    Genomic context

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    See LOC118422416 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    100 current Bfl_VNyyK (GCF_000003815.2) 9 NC_049987.1 (7074026..7150156, complement)

    Chromosome 9 - NC_049987.1Genomic Context describing neighboring genes Neighboring gene irregular chiasm C-roughest protein-like Neighboring gene hemicentin-2-like Neighboring gene DNA mismatch repair protein Msh2-like Neighboring gene uncharacterized LOC118422717 Neighboring gene protein DGCR6-like Neighboring gene importin subunit alpha-1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_049987.1 Chromosome 9 Reference Bfl_VNyyK Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Conserved Noncoding Elements in the Most Distant Genera of Cephalochordates: The Goldilocks Principle. Yue JX, et al. Genome Biol Evol, 2016 Aug 25. PMID 27412606, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein SON-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Branchiostoma floridae Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Bfl_VNyyK Primary Assembly

    Genomic

    1. NC_049987.1 Reference Bfl_VNyyK Primary Assembly

      Range
      7074026..7150156 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035829965.1 → XP_035685858.1  protein SON-like isoform X4

      UniProtKB/TrEMBL
      A0A9J7LMW3
      Conserved Domains (3) summary
      pfam17069
      Location:241 → 440
      RSRP; Arginine/Serine-Rich protein 1
      cd19870
      Location:760 → 834
      DSRM_SON-like; double-stranded RNA binding motif of protein SON and similar proteins
      pfam01585
      Location:692 → 733
      G-patch; G-patch domain

    2. XM_035829963.1 → XP_035685856.1  protein SON-like isoform X2

      UniProtKB/TrEMBL
      A0A9J7LMV3
      Conserved Domains (3) summary
      pfam17069
      Location:241 → 440
      RSRP; Arginine/Serine-Rich protein 1
      cd19870
      Location:790 → 864
      DSRM_SON-like; double-stranded RNA binding motif of protein SON and similar proteins
      pfam01585
      Location:722 → 763
      G-patch; G-patch domain

    3. XM_035829962.1 → XP_035685855.1  protein SON-like isoform X1

      UniProtKB/TrEMBL
      A0A9J7LRE8
      Conserved Domains (3) summary
      pfam17069
      Location:241 → 440
      RSRP; Arginine/Serine-Rich protein 1
      cd19870
      Location:802 → 876
      DSRM_SON-like; double-stranded RNA binding motif of protein SON and similar proteins
      pfam01585
      Location:734 → 775
      G-patch; G-patch domain

    4. XM_035829967.1 → XP_035685860.1  protein SON-like isoform X5

      UniProtKB/TrEMBL
      A0A9J7LPW2
      Conserved Domains (3) summary
      pfam17069
      Location:111 → 310
      RSRP; Arginine/Serine-Rich protein 1
      cd19870
      Location:672 → 746
      DSRM_SON-like; double-stranded RNA binding motif of protein SON and similar proteins
      pfam01585
      Location:604 → 645
      G-patch; G-patch domain

    5. XM_035829964.1 → XP_035685857.1  protein SON-like isoform X3

      UniProtKB/TrEMBL
      A0A9J7LNK6
      Conserved Domains (3) summary
      pfam17069
      Location:229 → 428
      RSRP; Arginine/Serine-Rich protein 1
      cd19870
      Location:790 → 864
      DSRM_SON-like; double-stranded RNA binding motif of protein SON and similar proteins
      pfam01585
      Location:722 → 763
      G-patch; G-patch domain

    6. XM_035829966.1 → XP_035685859.1  protein SON-like isoform X5

      UniProtKB/TrEMBL
      A0A9J7LPW2
      Conserved Domains (3) summary
      pfam17069
      Location:111 → 310
      RSRP; Arginine/Serine-Rich protein 1
      cd19870
      Location:672 → 746
      DSRM_SON-like; double-stranded RNA binding motif of protein SON and similar proteins
      pfam01585
      Location:604 → 645
      G-patch; G-patch domain

    7. XM_035829969.1 → XP_035685862.1  protein SON-like isoform X5

      UniProtKB/TrEMBL
      A0A9J7LPW2
      Conserved Domains (3) summary
      pfam17069
      Location:111 → 310
      RSRP; Arginine/Serine-Rich protein 1
      cd19870
      Location:672 → 746
      DSRM_SON-like; double-stranded RNA binding motif of protein SON and similar proteins
      pfam01585
      Location:604 → 645
      G-patch; G-patch domain

    8. XM_035829973.1 → XP_035685866.1  protein SON-like isoform X7

      UniProtKB/TrEMBL
      A0A9J7N0N9
      Conserved Domains (1) summary
      pfam17069
      Location:241 → 440
      RSRP; Arginine/Serine-Rich protein 1

    9. XM_035829971.1 → XP_035685864.1  protein SON-like isoform X6

      UniProtKB/TrEMBL
      A0A9J7LP94
      Conserved Domains (1) summary
      pfam17069
      Location:241 → 440
      RSRP; Arginine/Serine-Rich protein 1

    10. XM_035829972.1 → XP_035685865.1  protein SON-like isoform X7

      UniProtKB/TrEMBL
      A0A9J7N0N9
      Conserved Domains (1) summary
      pfam17069
      Location:241 → 440
      RSRP; Arginine/Serine-Rich protein 1

    11. XM_035829970.1 → XP_035685863.1  protein SON-like isoform X6

      UniProtKB/TrEMBL
      A0A9J7LP94
      Conserved Domains (1) summary
      pfam17069
      Location:241 → 440
      RSRP; Arginine/Serine-Rich protein 1

    RNA

    1. XR_004831891.1 RNA Sequence

    2. XR_004831890.1 RNA Sequence

    3. XR_004831892.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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