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    Erich1 glutamate-rich 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 306622, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Erich1provided by RGD
    Official Full Name
    glutamate-rich 1provided by RGD
    Primary source
    RGD:1559872
    See related
    EnsemblRapid:ENSRNOG00000042114 AllianceGenome:RGD:1559872
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1559872
    Summary
    Orthologous to human ERICH1 (glutamate rich 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Spleen (RPKM 51.3), Thymus (RPKM 41.0) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Erich1 in Genome Data Viewer
    Location:
    16q12.5
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (82203536..82271361)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (75501322..75569129)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (80601873..80667774)

    Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene DLG associated protein 2 Neighboring gene uncharacterized LOC134482419 Neighboring gene short transmembrane mitochondrial protein 1 like 1 Neighboring gene uncharacterized LOC134482528 Neighboring gene testis development related protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    glutamate-rich protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001127680.1 → NP_001121152.1  glutamate-rich protein 1

      See identical proteins and their annotated locations for NP_001121152.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473970
      UniProtKB/TrEMBL
      A6IWE5, F7FM87
      Conserved Domains (1) summary
      pfam12719
      Location:219 → 317
      Cnd3; Nuclear condensing complex subunits, C-term domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086034.1 Reference GRCr8

      Range
      82203536..82271361
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006253395.4 → XP_006253457.2  glutamate-rich protein 1 isoform X1

      UniProtKB/TrEMBL
      F7FM87
      Related
      ENSRNOP00000061175.5, ENSRNOT00000064468.5
      Conserved Domains (1) summary
      pfam12719
      Location:211 → 318
      Cnd3; Nuclear condensing complex subunits, C-term domain

    2. XM_039094598.2 → XP_038950526.1  glutamate-rich protein 1 isoform X3

      Conserved Domains (1) summary
      pfam12719
      Location:104 → 172
      Cnd3; Nuclear condensing complex subunits, C-term domain

    3. XM_039094597.2 → XP_038950525.1  glutamate-rich protein 1 isoform X2

    4. XM_039094599.2 → XP_038950527.1  glutamate-rich protein 1 isoform X4

      Conserved Domains (1) summary
      pfam12719
      Location:59 → 163
      Cnd3; Nuclear condensing complex subunits, C-term domain

    5. XM_039094600.2 → XP_038950528.1  glutamate-rich protein 1 isoform X4

      Conserved Domains (1) summary
      pfam12719
      Location:59 → 163
      Cnd3; Nuclear condensing complex subunits, C-term domain
    Nucleotide Protein Strain
    Heading Accession and Version

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