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    Ammecr1l AMME chromosomal region gene 1-like [ Mus musculus (house mouse) ]

    Gene ID: 225339, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Ammecr1lprovided by MGI
    Official Full Name
    AMME chromosomal region gene 1-likeprovided by MGI
    Primary source
    MGI:MGI:2442711
    See related
    Ensembl:ENSMUSG00000041915 AllianceGenome:MGI:2442711
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    5430429D03Rik; E230022H04Rik
    Summary
    Predicted to be active in nucleus. Is expressed in limb mesenchyme. Orthologous to human AMMECR1L (AMMECR1 like). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in testis adult (RPKM 16.4), limb E14.5 (RPKM 8.4) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Ammecr1l in Genome Data Viewer
    Location:
    18 B1; 18 17.84 cM
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (31891457..31917136)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (31758504..31784083)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene Sin3A associated protein Neighboring gene predicted gene, 52327 Neighboring gene protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E8707 Neighboring gene STARR-positive B cell enhancer ABC_E3226 Neighboring gene predicted gene, 26533 Neighboring gene STARR-positive B cell enhancer mm9_chr18:31963552-31963852 Neighboring gene polymerase (RNA) II (DNA directed) polypeptide D Neighboring gene STARR-positive B cell enhancer ABC_E10983 Neighboring gene WD repeat domain 33 Neighboring gene glutathione S-transferase, mu 2 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
    2. A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Yokoyama S, et al. Dev Cell, 2009 Dec. PMID 20059953, Free PMC Article
    3. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
    4. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
    5. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199

    See all (20) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC32132

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    AMMECR1-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001242430.1 → NP_001229359.1  AMMECR1-like protein isoform 1

      See identical proteins and their annotated locations for NP_001229359.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC161511, AK133018
      UniProtKB/TrEMBL
      Q3V0N3
      Conserved Domains (1) summary
      pfam01871
      Location:183 → 353
      AMMECR1; AMMECR1

    2. NM_153515.4 → NP_705735.1  AMMECR1-like protein isoform 2

      See identical proteins and their annotated locations for NP_705735.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) is shorter at the N-terminus compared to isoform 1.
      Source sequence(s)
      AC161511, AK151060, BC056948
      Consensus CDS
      CCDS37753.1
      UniProtKB/Swiss-Prot
      Q8JZZ6
      Related
      ENSMUSP00000111475.3, ENSMUST00000115808.4
      Conserved Domains (1) summary
      pfam01871
      Location:109 → 279
      AMMECR1

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      31891457..31917136
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030250427.2 → XP_030106287.1  AMMECR1-like protein isoform X7

      Conserved Domains (1) summary
      pfam01871
      Location:110 → 274
      AMMECR1

    2. XM_030250426.2 → XP_030106286.1  AMMECR1-like protein isoform X6

      UniProtKB/TrEMBL
      A0A3Q4EHL9
      Related
      ENSMUSP00000157050.2, ENSMUST00000234191.2
      Conserved Domains (1) summary
      pfam01871
      Location:109 → 274
      AMMECR1

    3. XM_036161101.1 → XP_036016994.1  AMMECR1-like protein isoform X7

      Conserved Domains (1) summary
      pfam01871
      Location:110 → 274
      AMMECR1

    4. XM_006525843.5 → XP_006525906.1  AMMECR1-like protein isoform X4

      See identical proteins and their annotated locations for XP_006525906.1

      UniProtKB/Swiss-Prot
      Q8JZZ6
      Conserved Domains (1) summary
      pfam01871
      Location:109 → 279
      AMMECR1

    5. XM_030250429.2 → XP_030106289.1  AMMECR1-like protein isoform X8

      Conserved Domains (1) summary
      pfam01871
      Location:109 → 212
      AMMECR1

    6. XM_006525841.5 → XP_006525904.1  AMMECR1-like protein isoform X1

      Conserved Domains (1) summary
      pfam01871
      Location:183 → 348
      AMMECR1

    7. XM_006525844.4 → XP_006525907.1  AMMECR1-like protein isoform X5

      Conserved Domains (1) summary
      pfam01871
      Location:183 → 286
      AMMECR1

    8. XM_006525842.3 → XP_006525905.1  AMMECR1-like protein isoform X3

      Conserved Domains (1) summary
      pfam01871
      Location:183 → 348
      AMMECR1

    9. XM_036161100.1 → XP_036016993.1  AMMECR1-like protein isoform X2

      Conserved Domains (1) summary
      pfam01871
      Location:174 → 338
      AMMECR1

    RNA

    1. XR_004939844.1 RNA Sequence

    2. XR_003952506.2 RNA Sequence

    3. XR_004939845.1 RNA Sequence

    4. XR_004939843.1 RNA Sequence

    5. XR_385986.5 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8JZZ6.1 GenPept UniProtKB/Swiss-Prot:Q8JZZ6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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