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    Gm4275 predicted gene 4275 [ Mus musculus (house mouse) ]

    Gene ID: 102636907, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Gm4275provided by MGI
    Official Full Name
    predicted gene 4275provided by MGI
    Primary source
    MGI:MGI:3782452
    See related
    AllianceGenome:MGI:3782452
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Dfa; 100043163
    Summary
    Acts upstream of or within negative regulation of transcription by RNA polymerase II. Located in cytoplasm and nuclear speck. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in testis adult (RPKM 5.7) and frontal lobe adult (RPKM 0.3) See more
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    Genomic context

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    See Gm4275 in Genome Data Viewer
    Location:
    7; 7 F3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (130121321..130132810)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (130519591..130530639)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 33661 Neighboring gene predicted gene, 39097 Neighboring gene ring finger and WD repeat domain 3 pseudogene Neighboring gene STARR-seq mESC enhancer starr_20244 Neighboring gene VISTA enhancer mm938 Neighboring gene STARR-seq mESC enhancer starr_20245 Neighboring gene arginyltransferase 1 Neighboring gene STARR-seq mESC enhancer starr_20247 Neighboring gene NSE4 homolog A, SMC5-SMC6 complex component Neighboring gene transforming, acidic coiled-coil containing protein 2 Neighboring gene STARR-seq mESC enhancer starr_20252 Neighboring gene predicted gene, 34365

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Mouse Dfa is a repressor of TATA-box promoters and interacts with the Abt1 activator of basal transcription. Brower CS, et al. J Biol Chem, 2010 May 28. PMID 20356838, Free PMC Article
    2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Dfa(A) acts as a repressor of TATA-box transcriptional promoters
      Title: Mouse Dfa is a repressor of TATA-box promoters and interacts with the Abt1 activator of basal transcription.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of transcription by RNA polymerase II IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nuclear speck IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative uncharacterized protein ZNRD1-AS1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      130121321..130132810
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006508430.5 → XP_006508493.1  putative uncharacterized protein ZNRD1-AS1

      Conserved Domains (1) summary
      pfam17658
      Location:72 → 208
      DUF5520; Family of unknown function (DUF5520)

    RNA

    1. XR_869987.2 RNA Sequence

    2. XR_869988.4 RNA Sequence

    3. XR_869989.4 RNA Sequence

    4. XR_004934335.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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