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    LOC118580116 BUD13 homolog [ Onychomys torridus (southern grasshopper mouse) ]

    Gene ID: 118580116, updated on 16-Nov-2023

    Summary

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    Gene symbol
    LOC118580116
    Gene description
    BUD13 homolog
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Onychomys torridus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Onychomys
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    Genomic context

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    See LOC118580116 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current mOncTor1.1 (GCF_903995425.1) 3 NC_050445.1 (113061467..113067215, complement)

    Chromosome 3 - NC_050445.1Genomic Context describing neighboring genes Neighboring gene cold shock domain-containing protein E1-like Neighboring gene hexokinase 2 Neighboring gene small nucleolar RNA SNORA42/SNORA80 family Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene ssemaphorin 4F

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_050445.1 Chromosome 3 Reference mOncTor1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RES complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2-type spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: BUD13 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Onychomys torridus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mOncTor1.1

    Genomic

    1. NC_050445.1 Reference mOncTor1.1

      Range
      113061467..113067215 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036181914.1 → XP_036037807.1  LOW QUALITY PROTEIN: BUD13 homolog

      Conserved Domains (2) summary
      pfam09736
      Location:378 → 520
      Bud13; Pre-mRNA-splicing factor of RES complex
      NF033845
      Location:129 → 324
      MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB
    Nucleotide Protein
    Heading Accession and Version

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