U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    Trpv5 transient receptor potential cation channel subfamily V member 5 [ Onychomys torridus (southern grasshopper mouse) ]

    Gene ID: 118580776, updated on 20-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    Trpv5
    Gene description
    transient receptor potential cation channel subfamily V member 5
    See related
    EnsemblRapid:ENSOTOG00005004022
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Onychomys torridus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Onychomys
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Trpv5 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    100 current mOncTor1.1 (GCF_903995425.1) 3 NC_050445.1 (28657714..28683741)

    Chromosome 3 - NC_050445.1Genomic Context describing neighboring genes Neighboring gene Kell metallo-endopeptidase (Kell blood group) Neighboring gene LLLL and CFNLAS motif containing 1 Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene transient receptor potential cation channel subfamily V member 6 Neighboring gene EPH receptor B6 Neighboring gene T cell receptor beta variable 30-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_050445.1 Chromosome 3 Reference mOncTor1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium ion import across plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    LOW QUALITY PROTEIN: transient receptor potential cation channel subfamily V member 5

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Onychomys torridus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mOncTor1.1

    Genomic

    1. NC_050445.1 Reference mOncTor1.1

      Range
      28657714..28683741
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036182727.1 → XP_036038620.1  LOW QUALITY PROTEIN: transient receptor potential cation channel subfamily V member 5

      Related
      ENSOTOP00005005276.1, ENSOTOT00005006047.1
      Conserved Domains (3) summary
      sd00045
      Location:111 → 141
      ANK; ANK repeat [structural motif]
      cd22192
      Location:23 → 627
      TRPV5-6; Transient Receptor Potential channel, Vanilloid subfamily (TRPV), types 5 and 6
      cd22296
      Location:642 → 719
      CBD_TRPV5_C; C-terminal CaM binding domain found in transient receptor potential cation channel subfamily V member 5 (TRPV5) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.