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    SMARCAL1 SNF2 related chromatin remodeling annealing helicase 1 [ Anas platyrhynchos (mallard) ]

    Gene ID: 101803813, updated on 20-Sep-2024

    Summary

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    Gene symbol
    SMARCAL1
    Gene description
    SNF2 related chromatin remodeling annealing helicase 1
    Locus tag
    Anapl_16514
    See related
    EnsemblRapid:ENSAPLG00030001709
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anas platyrhynchos
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
    Orthologs
    human mouse all
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    Genomic context

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    See SMARCAL1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    104 current ZJU1.0 (GCF_015476345.1) 7 NC_051778.1 (6537754..6570036)
    103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 7 NC_040052.1 (37158341..37190591, complement)

    Chromosome 7 - NC_051778.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113844218 Neighboring gene membrane associated ring-CH-type finger 4 Neighboring gene uncharacterized LOC113844131 Neighboring gene uncharacterized LOC119717476 Neighboring gene uncharacterized LOC106020455 Neighboring gene ribosomal protein L37a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in replication fork processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear replication fork IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1
    Names
    SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1
    SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ZJU1.0 Primary Assembly

    Genomic

    1. NC_051778.1 Reference ZJU1.0 Primary Assembly

      Range
      6537754..6570036
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027461406.2 → XP_027317207.2  LOW QUALITY PROTEIN: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1

      UniProtKB/TrEMBL
      A0A493TT87
      Related
      ENSAPLP00030003946.1, ENSAPLT00030004813.1
      Conserved Domains (3) summary
      cd18793
      Location:737 → 862
      SF2_C_SNF; C-terminal helicase domain of the SNF family helicases
      cd18010
      Location:465 → 674
      DEXHc_HARP_SMARCAL1; DEXH-box helicase domain of SMARCAL1
      pfam07443
      Location:268 → 322
      HARP; HepA-related protein (HARP)
    Nucleotide Protein
    Heading Accession and Version

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