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    slmapa sarcolemma associated protein a [ Scyliorhinus canicula (smaller spotted catshark) ]

    Gene ID: 119974033, updated on 21-Mar-2024

    Summary

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    Gene symbol
    slmapa
    Gene description
    sarcolemma associated protein a
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Scyliorhinus canicula
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Carcharhiniformes; Scyliorhinidae; Scyliorhinus
    Orthologs
    human zebrafish all
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    Genomic context

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    See slmapa in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    100 current sScyCan1.1 (GCF_902713615.1) 11 NC_052156.1 (41983086..42270166)

    Chromosome 11 - NC_052156.1Genomic Context describing neighboring genes Neighboring gene ADP-ribosylation factor 4-like Neighboring gene DENN/MADD domain containing 6Aa Neighboring gene U2 spliceosomal RNA Neighboring gene uncharacterized LOC119974034 Neighboring gene filamin B, like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052156.1 Chromosome 11 Reference sScyCan1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in acrosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in single fertilization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in acrosomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sarcolemma associated protein a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Scyliorhinus canicula Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference sScyCan1.1 Primary Assembly

    Genomic

    1. NC_052156.1 Reference sScyCan1.1 Primary Assembly

      Range
      41983086..42270166
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038812836.1 → XP_038668764.1  sarcolemma associated protein a isoform X1

      Conserved Domains (3) summary
      COG1196
      Location:163 → 881
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd00060
      Location:14 → 108
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd21911
      Location:165 → 227
      CC1_SLMAP; first coiled-coil (CC1) domain found in Sarcolemmal membrane-associated protein

    2. XM_038812840.1 → XP_038668768.1  sarcolemma associated protein a isoform X4

      Conserved Domains (3) summary
      COG1196
      Location:163 → 864
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd00060
      Location:14 → 108
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd21911
      Location:165 → 227
      CC1_SLMAP; first coiled-coil (CC1) domain found in Sarcolemmal membrane-associated protein

    3. XM_038812844.1 → XP_038668772.1  sarcolemma associated protein a isoform X8

      Conserved Domains (3) summary
      COG1196
      Location:163 → 842
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd00060
      Location:14 → 108
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd21911
      Location:165 → 227
      CC1_SLMAP; first coiled-coil (CC1) domain found in Sarcolemmal membrane-associated protein

    4. XM_038812853.1 → XP_038668781.1  sarcolemma associated protein a isoform X15

      Conserved Domains (3) summary
      COG1196
      Location:161 → 858
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd00060
      Location:14 → 108
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd21911
      Location:163 → 225
      CC1_SLMAP; first coiled-coil (CC1) domain found in Sarcolemmal membrane-associated protein

    5. XM_038812852.1 → XP_038668780.1  sarcolemma associated protein a isoform X14

      Conserved Domains (3) summary
      COG1196
      Location:161 → 841
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd00060
      Location:14 → 108
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd21911
      Location:163 → 225
      CC1_SLMAP; first coiled-coil (CC1) domain found in Sarcolemmal membrane-associated protein

    6. XM_038812837.1 → XP_038668765.1  sarcolemma associated protein a isoform X2

      Conserved Domains (3) summary
      COG1196
      Location:163 → 881
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd00060
      Location:14 → 108
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd21911
      Location:165 → 227
      CC1_SLMAP; first coiled-coil (CC1) domain found in Sarcolemmal membrane-associated protein

    7. XM_038812843.1 → XP_038668771.1  sarcolemma associated protein a isoform X7

      Conserved Domains (3) summary
      COG1196
      Location:163 → 860
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd00060
      Location:14 → 108
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd21911
      Location:165 → 227
      CC1_SLMAP; first coiled-coil (CC1) domain found in Sarcolemmal membrane-associated protein

    8. XM_038812838.1 → XP_038668766.1  sarcolemma associated protein a isoform X3

      Conserved Domains (3) summary
      COG1196
      Location:161 → 879
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd00060
      Location:14 → 108
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd21911
      Location:163 → 225
      CC1_SLMAP; first coiled-coil (CC1) domain found in Sarcolemmal membrane-associated protein

    9. XM_038812842.1 → XP_038668770.1  sarcolemma associated protein a isoform X6

      Conserved Domains (3) summary
      COG1196
      Location:161 → 862
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd00060
      Location:14 → 108
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd21911
      Location:163 → 225
      CC1_SLMAP; first coiled-coil (CC1) domain found in Sarcolemmal membrane-associated protein

    10. XM_038812841.1 → XP_038668769.1  sarcolemma associated protein a isoform X5

      Conserved Domains (3) summary
      COG1196
      Location:163 → 885
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd00060
      Location:14 → 108
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd21911
      Location:165 → 227
      CC1_SLMAP; first coiled-coil (CC1) domain found in Sarcolemmal membrane-associated protein

    11. XM_038812845.1 → XP_038668773.1  sarcolemma associated protein a isoform X9

      Conserved Domains (2) summary
      COG1196
      Location:33 → 751
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd21911
      Location:35 → 97
      CC1_SLMAP; first coiled-coil (CC1) domain found in Sarcolemmal membrane-associated protein

    12. XM_038812846.1 → XP_038668774.1  sarcolemma associated protein a isoform X10

      Conserved Domains (1) summary
      TIGR02169
      Location:6 → 363
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

    13. XM_038812847.1 → XP_038668775.1  sarcolemma associated protein a isoform X10

      Conserved Domains (1) summary
      TIGR02169
      Location:6 → 363
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

    14. XM_038812849.1 → XP_038668777.1  sarcolemma associated protein a isoform X12

      Conserved Domains (1) summary
      TIGR02169
      Location:24 → 342
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

    15. XM_038812848.1 → XP_038668776.1  sarcolemma associated protein a isoform X11

      Conserved Domains (1) summary
      TIGR02169
      Location:3 → 343
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

    16. XM_038812851.1 → XP_038668779.1  sarcolemma associated protein a isoform X13

      Conserved Domains (1) summary
      TIGR02169
      Location:4 → 322
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    Nucleotide Protein
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