U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    PDS5B PDS5 cohesin associated factor B [ Canis lupus familiaris (dog) ]

    Gene ID: 486014, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    PDS5Bprovided by VGNC
    Official Full Name
    PDS5 cohesin associated factor Bprovided by VGNC
    Primary source
    VGNC:VGNC:44393
    See related
    Ensembl:ENSCAFG00845014958
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Also known as
    APRIN
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PDS5B in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    38
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 25 NC_051829.1 (7503195..7683352, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 25 NC_006607.4 (7437222..7617068, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 25 NC_049246.1 (7458932..7638962, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 25 NC_049285.1 (7402088..7583594, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 25 NC_049766.1 (7401438..7581519, complement)

    Chromosome 25 - NC_051829.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102153523 Neighboring gene myosin IC heavy chain-like Neighboring gene small nucleolar RNA ACA64 Neighboring gene vimentin-like Neighboring gene uncharacterized LOC111092442 Neighboring gene NEDD4 binding protein 2 like 2 Neighboring gene uncharacterized LOC119865898 Neighboring gene NEDD4 binding protein 2 like 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic sister chromatid cohesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    sister chromatid cohesion protein PDS5 homolog B; LOW QUALITY PROTEIN: sister chromatid cohesion protein PDS5 homolog B
    Names
    PDS5, regulator of cohesion maintenance, homolog B
    androgen-induced proliferation inhibitor

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051829.1 Reference ROS_Cfam_1.0

      Range
      7503195..7683352 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038434897.1 → XP_038290825.1  sister chromatid cohesion protein PDS5 homolog B isoform X4

      UniProtKB/TrEMBL
      A0A8C0PQ17
      Conserved Domains (2) summary
      sd00044
      Location:240 → 261
      HEAT; HEAT repeat [structural motif]
      cd19953
      Location:31 → 661
      PDS5; Sister chromatid cohesion protein PDS5

    2. XM_038434896.1 → XP_038290824.1  sister chromatid cohesion protein PDS5 homolog B isoform X3

      UniProtKB/TrEMBL
      A0A8C0PQ17
      Conserved Domains (3) summary
      PTZ00108
      Location:1197 → 1420
      PTZ00108; DNA topoisomerase 2-like protein; Provisional
      sd00044
      Location:240 → 261
      HEAT; HEAT repeat [structural motif]
      cd19953
      Location:31 → 661
      PDS5; Sister chromatid cohesion protein PDS5

    3. XM_038434894.1 → XP_038290822.1  sister chromatid cohesion protein PDS5 homolog B isoform X1

      UniProtKB/TrEMBL
      A0A8C0LG57, A0A8C0PQ17
      Conserved Domains (3) summary
      PTZ00108
      Location:1212 → 1422
      PTZ00108; DNA topoisomerase 2-like protein; Provisional
      sd00044
      Location:240 → 261
      HEAT; HEAT repeat [structural motif]
      cd19953
      Location:31 → 661
      PDS5; Sister chromatid cohesion protein PDS5

    4. XM_038434898.1 → XP_038290826.1  sister chromatid cohesion protein PDS5 homolog B isoform X5

      UniProtKB/TrEMBL
      A0A8C0LPU8, A0A8C0PQ17, A0A8C0RT40, A0A8I3NK22
      Related
      ENSCAFP00845021145.1, ENSCAFT00845026855.1
      Conserved Domains (2) summary
      sd00044
      Location:240 → 261
      HEAT; HEAT repeat [structural motif]
      cd19953
      Location:31 → 661
      PDS5; Sister chromatid cohesion protein PDS5

    5. XM_038434895.1 → XP_038290823.1  sister chromatid cohesion protein PDS5 homolog B isoform X2

      UniProtKB/TrEMBL
      A0A8C0PK11, A0A8C0PQ17, A0A8I3NVE3
      Related
      ENSCAFP00845021086.1, ENSCAFT00845026769.1
      Conserved Domains (2) summary
      sd00044
      Location:240 → 261
      HEAT; HEAT repeat [structural motif]
      cd19953
      Location:31 → 661
      PDS5; Sister chromatid cohesion protein PDS5

    6. XM_038434899.1 → XP_038290827.1  sister chromatid cohesion protein PDS5 homolog B isoform X6

      UniProtKB/TrEMBL
      A0A8C0PQ17, A0A8C0PU17
      Related
      ENSCAFP00845021159.1, ENSCAFT00845026876.1
      Conserved Domains (2) summary
      sd00044
      Location:240 → 261
      HEAT; HEAT repeat [structural motif]
      cd19953
      Location:31 → 661
      PDS5; Sister chromatid cohesion protein PDS5

    7. XM_038434900.1 → XP_038290828.1  sister chromatid cohesion protein PDS5 homolog B isoform X7

      Conserved Domains (2) summary
      sd00044
      Location:240 → 261
      HEAT; HEAT repeat [structural motif]
      cd19953
      Location:31 → 661
      PDS5; Sister chromatid cohesion protein PDS5

    RNA

    1. XR_005301521.1 RNA Sequence

    2. XR_005301522.1 RNA Sequence

    3. XR_005301523.1 RNA Sequence

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049285.1 Alternate UMICH_Zoey_3.1

      Range
      7402088..7583594 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038509878.1 → XP_038365806.1  LOW QUALITY PROTEIN: sister chromatid cohesion protein PDS5 homolog B isoform X2

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049766.1 Alternate UNSW_CanFamBas_1.0

      Range
      7401438..7581519 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038637597.1 → XP_038493525.1  sister chromatid cohesion protein PDS5 homolog B isoform X4

    2. XM_038637596.1 → XP_038493524.1  sister chromatid cohesion protein PDS5 homolog B isoform X3

    3. XM_038637594.1 → XP_038493522.1  sister chromatid cohesion protein PDS5 homolog B isoform X1

    4. XM_038637598.1 → XP_038493526.1  sister chromatid cohesion protein PDS5 homolog B isoform X5

    5. XM_038637595.1 → XP_038493523.1  sister chromatid cohesion protein PDS5 homolog B isoform X2

    6. XM_038637599.1 → XP_038493527.1  sister chromatid cohesion protein PDS5 homolog B isoform X6

      Conserved Domains (2) summary
      sd00044
      Location:240 → 261
      HEAT; HEAT repeat [structural motif]
      cd19953
      Location:31 → 661
      PDS5; Sister chromatid cohesion protein PDS5

    7. XM_038637600.1 → XP_038493528.1  sister chromatid cohesion protein PDS5 homolog B isoform X7

      Conserved Domains (2) summary
      sd00044
      Location:240 → 261
      HEAT; HEAT repeat [structural motif]
      cd19953
      Location:31 → 661
      PDS5; Sister chromatid cohesion protein PDS5

    RNA

    1. XR_005412255.1 RNA Sequence

    2. XR_005412256.1 RNA Sequence

    3. XR_005412257.1 RNA Sequence

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049246.1 Alternate UU_Cfam_GSD_1.0

      Range
      7458932..7638962 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038573312.1 → XP_038429240.1  sister chromatid cohesion protein PDS5 homolog B isoform X4

      UniProtKB/TrEMBL
      A0A8C0PQ17
      Conserved Domains (2) summary
      sd00044
      Location:240 → 261
      HEAT; HEAT repeat [structural motif]
      cd19953
      Location:31 → 661
      PDS5; Sister chromatid cohesion protein PDS5

    2. XM_038573311.1 → XP_038429239.1  sister chromatid cohesion protein PDS5 homolog B isoform X3

      UniProtKB/TrEMBL
      A0A8C0PQ17
      Conserved Domains (3) summary
      PTZ00108
      Location:1197 → 1420
      PTZ00108; DNA topoisomerase 2-like protein; Provisional
      sd00044
      Location:240 → 261
      HEAT; HEAT repeat [structural motif]
      cd19953
      Location:31 → 661
      PDS5; Sister chromatid cohesion protein PDS5

    3. XM_038573309.1 → XP_038429237.1  sister chromatid cohesion protein PDS5 homolog B isoform X1

      UniProtKB/TrEMBL
      A0A8C0LG57, A0A8C0PQ17
      Conserved Domains (3) summary
      PTZ00108
      Location:1212 → 1422
      PTZ00108; DNA topoisomerase 2-like protein; Provisional
      sd00044
      Location:240 → 261
      HEAT; HEAT repeat [structural motif]
      cd19953
      Location:31 → 661
      PDS5; Sister chromatid cohesion protein PDS5

    4. XM_038573313.1 → XP_038429241.1  sister chromatid cohesion protein PDS5 homolog B isoform X5

      UniProtKB/TrEMBL
      A0A8C0LPU8, A0A8C0PQ17, A0A8C0RT40, A0A8I3NK22
      Conserved Domains (2) summary
      sd00044
      Location:240 → 261
      HEAT; HEAT repeat [structural motif]
      cd19953
      Location:31 → 661
      PDS5; Sister chromatid cohesion protein PDS5

    5. XM_038573310.1 → XP_038429238.1  sister chromatid cohesion protein PDS5 homolog B isoform X2

      UniProtKB/TrEMBL
      A0A8C0PK11, A0A8C0PQ17, A0A8I3NVE3
      Conserved Domains (2) summary
      sd00044
      Location:240 → 261
      HEAT; HEAT repeat [structural motif]
      cd19953
      Location:31 → 661
      PDS5; Sister chromatid cohesion protein PDS5

    6. XM_038573314.1 → XP_038429242.1  sister chromatid cohesion protein PDS5 homolog B isoform X6

      UniProtKB/TrEMBL
      A0A8C0PQ17, A0A8C0PU17
      Conserved Domains (2) summary
      sd00044
      Location:240 → 261
      HEAT; HEAT repeat [structural motif]
      cd19953
      Location:31 → 661
      PDS5; Sister chromatid cohesion protein PDS5

    7. XM_038573315.1 → XP_038429243.1  sister chromatid cohesion protein PDS5 homolog B isoform X7

      Conserved Domains (2) summary
      sd00044
      Location:240 → 261
      HEAT; HEAT repeat [structural motif]
      cd19953
      Location:31 → 661
      PDS5; Sister chromatid cohesion protein PDS5

    RNA

    1. XR_005378358.1 RNA Sequence

    2. XR_005378359.1 RNA Sequence

    3. XR_005378360.1 RNA Sequence

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006607.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      7437222..7617068 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005635475.4 → XP_005635532.1  sister chromatid cohesion protein PDS5 homolog B isoform X4

      UniProtKB/TrEMBL
      A0A8C0PQ17
      Conserved Domains (2) summary
      sd00044
      Location:240 → 261
      HEAT; HEAT repeat [structural motif]
      cd19953
      Location:31 → 661
      PDS5; Sister chromatid cohesion protein PDS5

    2. XM_005635474.4 → XP_005635531.1  sister chromatid cohesion protein PDS5 homolog B isoform X3

      UniProtKB/TrEMBL
      A0A8C0PQ17
      Conserved Domains (3) summary
      PTZ00108
      Location:1197 → 1420
      PTZ00108; DNA topoisomerase 2-like protein; Provisional
      sd00044
      Location:240 → 261
      HEAT; HEAT repeat [structural motif]
      cd19953
      Location:31 → 661
      PDS5; Sister chromatid cohesion protein PDS5

    3. XM_005635473.4 → XP_005635530.1  sister chromatid cohesion protein PDS5 homolog B isoform X1

      UniProtKB/TrEMBL
      A0A8C0LG57, A0A8C0PQ17
      Conserved Domains (3) summary
      PTZ00108
      Location:1212 → 1422
      PTZ00108; DNA topoisomerase 2-like protein; Provisional
      sd00044
      Location:240 → 261
      HEAT; HEAT repeat [structural motif]
      cd19953
      Location:31 → 661
      PDS5; Sister chromatid cohesion protein PDS5

    4. XM_005635476.4 → XP_005635533.1  sister chromatid cohesion protein PDS5 homolog B isoform X5

      UniProtKB/TrEMBL
      A0A8C0LPU8, A0A8C0PQ17, A0A8C0RT40, A0A8I3NK22
      Conserved Domains (2) summary
      sd00044
      Location:240 → 261
      HEAT; HEAT repeat [structural motif]
      cd19953
      Location:31 → 661
      PDS5; Sister chromatid cohesion protein PDS5

    5. XM_543139.7 → XP_543139.3  sister chromatid cohesion protein PDS5 homolog B isoform X2

      UniProtKB/TrEMBL
      A0A8C0PK11, A0A8C0PQ17, A0A8I3NVE3
      Conserved Domains (2) summary
      sd00044
      Location:240 → 261
      HEAT; HEAT repeat [structural motif]
      cd19953
      Location:31 → 661
      PDS5; Sister chromatid cohesion protein PDS5

    6. XM_022409941.2 → XP_022265649.1  sister chromatid cohesion protein PDS5 homolog B isoform X6

      UniProtKB/TrEMBL
      A0A8C0PQ17, A0A8C0PU17
      Conserved Domains (2) summary
      sd00044
      Location:240 → 261
      HEAT; HEAT repeat [structural motif]
      cd19953
      Location:31 → 661
      PDS5; Sister chromatid cohesion protein PDS5

    7. XM_022409944.2 → XP_022265652.1  sister chromatid cohesion protein PDS5 homolog B isoform X7

      Conserved Domains (2) summary
      sd00044
      Location:240 → 261
      HEAT; HEAT repeat [structural motif]
      cd19953
      Location:31 → 661
      PDS5; Sister chromatid cohesion protein PDS5

    RNA

    1. XR_005314728.1 RNA Sequence

    2. XR_005314729.1 RNA Sequence

    3. XR_005314730.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.