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    LOC120066973 testican-2-like [ Salvelinus namaycush (lake trout) ]

    Gene ID: 120066973, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120066973
    Gene description
    testican-2-like
    See related
    EnsemblRapid:ENSSNMG00000013398
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salvelinus namaycush
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
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    Genomic context

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    See LOC120066973 in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    100 current SaNama_1.0 (GCF_016432855.1) 22 NC_052328.1 (1888266..2027741)

    Chromosome 22 - NC_052328.1Genomic Context describing neighboring genes Neighboring gene anaphase promoting complex subunit 16 Neighboring gene activating signal cointegrator 1 complex subunit 1 Neighboring gene secretion associated, Ras related GTPase 1Aa Neighboring gene inorganic pyrophosphatase 1a

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052328.1 Chromosome 22 Reference SaNama_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    testican-2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Salvelinus namaycush Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SaNama_1.0 Primary Assembly

    Genomic

    1. NC_052328.1 Reference SaNama_1.0 Primary Assembly

      Range
      1888266..2027741
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039018310.1 → XP_038874238.1  testican-2-like

      UniProtKB/TrEMBL
      A0A8U1FCR8
      Related
      ENSSNMP00000016990.1, ENSSNMT00000019981.1
      Conserved Domains (3) summary
      cd16238
      Location:196 → 307
      EFh_SPARC_TICN2; EF-hand, extracellular calcium-binding (EC) motif, found in testican-2 (TICN2)
      pfam00086
      Location:310 → 373
      Thyroglobulin_1; Thyroglobulin type-1 repeat
      pfam07648
      Location:131 → 177
      Kazal_2; Kazal-type serine protease inhibitor domain
    Nucleotide Protein
    Heading Accession and Version

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