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    LOC120111575 zinc finger BED domain-containing protein RICESLEEPER 1-like [ Phoenix dactylifera (date palm) ]

    Gene ID: 120111575, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120111575
    Gene description
    zinc finger BED domain-containing protein RICESLEEPER 1-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Phoenix dactylifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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    Genomic context

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    See LOC120111575 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    103 current palm_55x_up_171113_PBpolish2nd_filt_p (GCF_009389715.1) 8 NC_052399.1 (12454257..12461133, complement)

    Chromosome 8 - NC_052399.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120111781 Neighboring gene uncharacterized LOC103695825 Neighboring gene magnesium transporter MRS2-I Neighboring gene TATA-box-binding protein 2-like Neighboring gene exocyst complex component SEC15A-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052399.1 Chromosome 8 Reference palm_55x_up_171113_PBpolish2nd_filt_p Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger BED domain-containing protein RICESLEEPER 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Phoenix dactylifera Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference palm_55x_up_171113_PBpolish2nd_filt_p Primary Assembly

    Genomic

    1. NC_052399.1 Reference palm_55x_up_171113_PBpolish2nd_filt_p Primary Assembly

      Range
      12454257..12461133 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039128951.1 → XP_038984879.1  zinc finger BED domain-containing protein RICESLEEPER 1-like

      UniProtKB/TrEMBL
      A0A8B9ANI9
      Conserved Domains (3) summary
      smart00614
      Location:39 → 86
      ZnF_BED; BED zinc finger
      pfam05699
      Location:556 → 640
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region
      pfam14372
      Location:402 → 502
      DUF4413; Domain of unknown function (DUF4413)
    Nucleotide Protein
    Heading Accession and Version

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