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    F13H10.3 Amino acid transporter transmembrane domain-containing protein;Sodium-coupled neutral amino acid transporter 9 homolog [ Caenorhabditis elegans ]

    Gene ID: 177997, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F13H10.3
    Official Full Name
    Amino acid transporter transmembrane domain-containing protein;Sodium-coupled neutral amino acid transporter 9 homolog
    Primary source
    WormBase:WBGene00008774
    Locus tag
    CELE_F13H10.3
    See related
    AllianceGenome:WB:WBGene00008774
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable L-amino acid transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport. Predicted to be located in late endosome membrane and lysosome. Predicted to be active in lysosomal membrane. Orthologous to human SLC38A9 (solute carrier family 38 member 9). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F13H10.3 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    11
    Sequence:
    Chromosome: IV; NC_003282.8 (11012091..11015953, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene MADF domain-containing protein Neighboring gene Cysteine-rich transmembrane CYSTM domain-containing protein Neighboring gene NAD(+) diphosphatase;NAD-capped RNA hydrolase ndx-9 Neighboring gene Mannosyl-oligosaccharide glucosidase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ABC transporter permease;Small subunit of serine palmitoyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables L-amino acid transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in L-alpha-amino acid transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in amino acid transmembrane transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in amino acid transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in late endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in lysosomal membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in lysosomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in lysosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Amino acid transporter transmembrane domain-containing protein;Sodium-coupled neutral amino acid transporter 9 homolog
    NP_001076680.1
    • Confirmed by transcript evidence
    NP_001293946.1
    • Partially confirmed by transcript evidence
    NP_741486.1
    • Confirmed by transcript evidence
    NP_741487.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      11012091..11015953 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_171417.8 → NP_741486.1  Sodium-coupled neutral amino acid transporter 9 homolog [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_741486.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q19425
      Conserved Domains (2) summary
      COG0814
      Location:168 → 613
      SdaC; Amino acid permease [Amino acid transport and metabolism]
      cl00456
      Location:168 → 611
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    2. NM_171917.4 → NP_741487.1  Amino acid transporter transmembrane domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_741487.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8T3E2
      Conserved Domains (2) summary
      COG0814
      Location:170 → 615
      SdaC; Amino acid permease [Amino acid transport and metabolism]
      cl00456
      Location:170 → 613
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    3. NM_001307017.3 → NP_001293946.1  Amino acid transporter transmembrane domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001293946.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A061ADY8
      Conserved Domains (2) summary
      COG0814
      Location:138 → 583
      SdaC; Amino acid permease [Amino acid transport and metabolism]
      cl00456
      Location:138 → 581
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    4. NM_001083211.4 → NP_001076680.1  Amino acid transporter transmembrane domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001076680.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q0G831
      Conserved Domains (2) summary
      COG0814
      Location:136 → 581
      SdaC; Amino acid permease [Amino acid transport and metabolism]
      cl00456
      Location:136 → 579
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q19425.2

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