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    OTOF otoferlin [ Corvus cornix cornix ]

    Gene ID: 104683142, updated on 3-Aug-2024

    Summary

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    Gene symbol
    OTOF
    Gene description
    otoferlin
    See related
    EnsemblRapid:ENSCCCG00025008040
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Corvus cornix cornix (sub-species: cornix)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Corvoidea; Corvidae; Corvus
    Orthologs
    human mouse all
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    Genomic context

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    See OTOF in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    46
    Annotation release Status Assembly Chr Location
    104 current ASM73873v5 (GCF_000738735.5) 3 NC_047056.1 (113732595..113811703)
    101 previous assembly Hooded_Crow_genome (GCF_000738735.1) Unplaced Scaffold NW_010959084.1 (555354..598203, complement)

    Chromosome 3 - NC_047056.1Genomic Context describing neighboring genes Neighboring gene leucine-rich repeat extensin-like protein 3 Neighboring gene PDZ binding kinase Neighboring gene interferon-induced very large GTPase 1-like Neighboring gene interferon-induced very large GTPase 1-like Neighboring gene hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables AP-2 adaptor complex binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in plasma membrane organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synaptic vesicle priming IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in presynaptic active zone membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synaptic vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: otoferlin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Corvus cornix cornix Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM73873v5 Primary Assembly

    Genomic

    1. NC_047056.1 Reference ASM73873v5 Primary Assembly

      Range
      113732595..113811703
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039569728.1 → XP_039425662.1  LOW QUALITY PROTEIN: otoferlin

      Related
      ENSCCCP00025014435.1, ENSCCCT00025017020.1
      Conserved Domains (9) summary
      cd04011
      Location:261 → 372
      C2B_Ferlin; C2 domain second repeat in Ferlin
      cd04017
      Location:971 → 1108
      C2D_Ferlin; C2 domain fourth repeat in Ferlin
      cd04018
      Location:428 → 577
      C2C_Ferlin; C2 domain third repeat in Ferlin
      cd04037
      Location:1509 → 1632
      C2E_Ferlin; C2 domain fifth repeat in Ferlin
      cd08373
      Location:3 → 130
      C2A_Ferlin; C2 domain first repeat in Ferlin
      cd08374
      Location:1749 → 1882
      C2F_Ferlin; C2 domain sixth repeat in Ferlin
      pfam08150
      Location:853 → 928
      FerB; FerB (NUC096) domain
      pfam08151
      Location:370 → 419
      FerI; FerI (NUC094) domain
      pfam16165
      Location:1892 → 2010
      Ferlin_C; Ferlin C-terminus
    Nucleotide Protein
    Heading Accession and Version

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