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    LOC11443454 CCG-binding protein 1 [ Medicago truncatula (barrel medic) ]

    Gene ID: 11443454, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC11443454
    Gene description
    CCG-binding protein 1
    Locus tag
    MtrunA17_Chr4g0045491
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC11443454 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 4 NC_053045.1 (42107690..42109417, complement)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 4 NC_016410.2 (34147944..34149671, complement)

    Chromosome 4 - NC_053045.1Genomic Context describing neighboring genes Neighboring gene protein DMR6-LIKE OXYGENASE 1 Neighboring gene pentatricopeptide repeat-containing protein At4g16470 Neighboring gene uncharacterized LOC11445171 Neighboring gene cell division cycle-associated protein 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mediator complex binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in pollen tube guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CCG-binding protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053045.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      42107690..42109417 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003608005.4 → XP_003608053.1  CCG-binding protein 1 isoform X2

      See identical proteins and their annotated locations for XP_003608053.1

      UniProtKB/TrEMBL
      G7JNK1, I3SFD6

    2. XM_003608004.4 → XP_003608052.1  CCG-binding protein 1 isoform X1

      See identical proteins and their annotated locations for XP_003608052.1

      UniProtKB/TrEMBL
      G7JNK2, I3SFD6
    Nucleotide Protein
    Heading Accession and Version

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