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    LOC121409105 EF-hand calcium-binding domain-containing protein 5-like [ Lytechinus variegatus (green sea urchin) ]

    Gene ID: 121409105, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC121409105
    Gene description
    EF-hand calcium-binding domain-containing protein 5-like
    See related
    EnsemblRapid:LOC121409105
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lytechinus variegatus
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Temnopleuroida; Toxopneustidae; Lytechinus
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    Genomic context

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    See LOC121409105 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    100 current Lvar_3.0 (GCF_018143015.1) 2 NC_054741.1 (77040539..77068341)

    Chromosome 2 - NC_054741.1Genomic Context describing neighboring genes Neighboring gene NIF3-like protein 1 Neighboring gene homeobox protein MIXL1-like Neighboring gene acyl-CoA dehydrogenase family member 11-like Neighboring gene C-type mannose receptor 2-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_054741.1 Chromosome 2 Reference Lvar_3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    EF-hand calcium-binding domain-containing protein 5-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lytechinus variegatus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Lvar_3.0 Primary Assembly

    Genomic

    1. NC_054741.1 Reference Lvar_3.0 Primary Assembly

      Range
      77040539..77068341
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041600923.1 → XP_041456857.1  EF-hand calcium-binding domain-containing protein 5-like isoform X1

      Related
      XP_041456857.1, XM_041600923.1
      Conserved Domains (7) summary
      smart00054
      Location:942 → 969
      EFh; EF-hand, calcium binding motif
      COG1196
      Location:73 → 321
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      PRK10811
      Location:686 → 828
      rne; ribonuclease E; Reviewed
      TIGR00927
      Location:453 → 725
      2A1904; K+-dependent Na+/Ca+ exchanger
      cd15898
      Location:944 → 970
      EFh_PI-PLC; EF-hand motif [structural motif]
      cl28895
      Location:944 → 1009
      EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes
      cl08302
      Location:913 → 967
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

    2. XM_041600926.1 → XP_041456860.1  EF-hand calcium-binding domain-containing protein 5-like isoform X4

      Related
      XP_041456860.1, XM_041600926.1
      Conserved Domains (7) summary
      smart00054
      Location:942 → 969
      EFh; EF-hand, calcium binding motif
      COG1196
      Location:73 → 321
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      PRK10811
      Location:686 → 828
      rne; ribonuclease E; Reviewed
      TIGR00927
      Location:453 → 725
      2A1904; K+-dependent Na+/Ca+ exchanger
      cd15898
      Location:944 → 970
      EFh_PI-PLC; EF-hand motif [structural motif]
      cl28895
      Location:944 → 1009
      EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes
      cl08302
      Location:913 → 967
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

    3. XM_041600924.1 → XP_041456858.1  EF-hand calcium-binding domain-containing protein 5-like isoform X2

      Related
      XP_041456858.1, XM_041600924.1
      Conserved Domains (7) summary
      smart00054
      Location:942 → 969
      EFh; EF-hand, calcium binding motif
      COG1196
      Location:73 → 321
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      PRK10811
      Location:686 → 828
      rne; ribonuclease E; Reviewed
      TIGR00927
      Location:453 → 725
      2A1904; K+-dependent Na+/Ca+ exchanger
      cd15898
      Location:944 → 970
      EFh_PI-PLC; EF-hand motif [structural motif]
      cl28895
      Location:944 → 1009
      EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes
      cl08302
      Location:913 → 967
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

    4. XM_041600927.1 → XP_041456861.1  EF-hand calcium-binding domain-containing protein 5-like isoform X5

      Related
      XP_041456861.1, XM_041600927.1
      Conserved Domains (7) summary
      smart00054
      Location:942 → 969
      EFh; EF-hand, calcium binding motif
      COG1196
      Location:73 → 321
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      PRK10811
      Location:686 → 828
      rne; ribonuclease E; Reviewed
      TIGR00927
      Location:453 → 725
      2A1904; K+-dependent Na+/Ca+ exchanger
      cd15898
      Location:944 → 970
      EFh_PI-PLC; EF-hand motif [structural motif]
      cl28895
      Location:944 → 1009
      EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes
      cl08302
      Location:913 → 967
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

    5. XM_041600925.1 → XP_041456859.1  EF-hand calcium-binding domain-containing protein 5-like isoform X3

      Related
      XP_041456859.1, XM_041600925.1
      Conserved Domains (7) summary
      smart00054
      Location:942 → 969
      EFh; EF-hand, calcium binding motif
      COG1196
      Location:73 → 321
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      PRK10811
      Location:686 → 828
      rne; ribonuclease E; Reviewed
      TIGR00927
      Location:453 → 725
      2A1904; K+-dependent Na+/Ca+ exchanger
      cd15898
      Location:944 → 970
      EFh_PI-PLC; EF-hand motif [structural motif]
      cl28895
      Location:944 → 1009
      EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes
      cl08302
      Location:913 → 967
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

    6. XM_041600928.1 → XP_041456862.1  EF-hand calcium-binding domain-containing protein 5-like isoform X6

      Related
      XP_041456862.1, XM_041600928.1
      Conserved Domains (7) summary
      smart00054
      Location:942 → 969
      EFh; EF-hand, calcium binding motif
      COG1196
      Location:73 → 321
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      PRK10811
      Location:686 → 828
      rne; ribonuclease E; Reviewed
      TIGR00927
      Location:453 → 725
      2A1904; K+-dependent Na+/Ca+ exchanger
      cd15898
      Location:944 → 970
      EFh_PI-PLC; EF-hand motif [structural motif]
      cl28895
      Location:944 → 1009
      EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes
      cl08302
      Location:913 → 967
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

    7. XM_041600929.1 → XP_041456863.1  EF-hand calcium-binding domain-containing protein 5-like isoform X7

      Related
      XP_041456863.1, XM_041600929.1
      Conserved Domains (6) summary
      smart00054
      Location:724 → 751
      EFh; EF-hand, calcium binding motif
      COG1196
      Location:73 → 321
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      PRK13108
      Location:452 → 599
      PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
      cd15898
      Location:726 → 752
      EFh_PI-PLC; EF-hand motif [structural motif]
      cl28895
      Location:726 → 791
      EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes
      cl08302
      Location:695 → 749
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    Nucleotide Protein
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