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    LOC121418581 metastasis-associated protein MTA3-like [ Lytechinus variegatus (green sea urchin) ]

    Gene ID: 121418581, updated on 25-Jan-2024

    Summary

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    Gene symbol
    LOC121418581
    Gene description
    metastasis-associated protein MTA3-like
    See related
    EnsemblRapid:LOC121418581
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lytechinus variegatus
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Temnopleuroida; Toxopneustidae; Lytechinus
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    Genomic context

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    See LOC121418581 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    100 current Lvar_3.0 (GCF_018143015.1) 7 NC_054746.1 (16762792..16777422, complement)

    Chromosome 7 - NC_054746.1Genomic Context describing neighboring genes Neighboring gene HHIP-like protein 1 Neighboring gene transmembrane protein 179B-like Neighboring gene cytoplasmic dynein 1 heavy chain 1-like Neighboring gene alpha-ketoglutarate-dependent dioxygenase alkB homolog 6-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_054746.1 Chromosome 7 Reference Lvar_3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone deacetylase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of NuRD complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    metastasis-associated protein MTA3-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lytechinus variegatus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Lvar_3.0 Primary Assembly

    Genomic

    1. NC_054746.1 Reference Lvar_3.0 Primary Assembly

      Range
      16762792..16777422 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041612523.1 → XP_041468457.1  metastasis-associated protein MTA3-like isoform X4

      Related
      XP_041468457.1, XM_041612523.1
      Conserved Domains (4) summary
      cd11661
      Location:269 → 314
      SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
      smart00401
      Location:381 → 431
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
      cd04709
      Location:3 → 170
      BAH_MTA; BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH ...
      sd00019
      Location:454 → 477
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. XM_041612522.1 → XP_041468456.1  metastasis-associated protein MTA3-like isoform X3

      Related
      XP_041468456.1, XM_041612522.1
      Conserved Domains (4) summary
      cd11661
      Location:269 → 314
      SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
      smart00401
      Location:381 → 431
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
      cd04709
      Location:3 → 170
      BAH_MTA; BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH ...
      sd00019
      Location:454 → 477
      ZF_C2H2; C2H2 Zn finger [structural motif]

    3. XM_041612521.1 → XP_041468455.1  metastasis-associated protein MTA3-like isoform X2

      Related
      XP_041468455.1, XM_041612521.1
      Conserved Domains (4) summary
      cd11661
      Location:269 → 314
      SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
      smart00401
      Location:381 → 431
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
      cd04709
      Location:3 → 170
      BAH_MTA; BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH ...
      sd00019
      Location:454 → 477
      ZF_C2H2; C2H2 Zn finger [structural motif]

    4. XM_041612526.1 → XP_041468460.1  metastasis-associated protein MTA3-like isoform X6

      Related
      XP_041468460.1, XM_041612526.1
      Conserved Domains (3) summary
      cd11661
      Location:269 → 314
      SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
      smart00401
      Location:381 → 431
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
      cd04709
      Location:3 → 170
      BAH_MTA; BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH ...

    5. XM_041612524.1 → XP_041468458.1  metastasis-associated protein MTA3-like isoform X5

      Related
      XP_041468458.1, XM_041612524.1
      Conserved Domains (3) summary
      cd11661
      Location:269 → 314
      SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
      smart00401
      Location:381 → 431
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
      cd04709
      Location:3 → 170
      BAH_MTA; BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH ...

    6. XM_041612519.1 → XP_041468453.1  metastasis-associated protein MTA3-like isoform X1

      Related
      XP_041468453.1, XM_041612519.1
      Conserved Domains (3) summary
      cd11661
      Location:269 → 314
      SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
      smart00401
      Location:381 → 431
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
      cd04709
      Location:3 → 170
      BAH_MTA; BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH ...

    7. XM_041612525.1 → XP_041468459.1  metastasis-associated protein MTA3-like isoform X5

      Related
      XP_041468459.1, XM_041612525.1
      Conserved Domains (3) summary
      cd11661
      Location:269 → 314
      SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
      smart00401
      Location:381 → 431
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
      cd04709
      Location:3 → 170
      BAH_MTA; BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH ...
    Nucleotide Protein
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