U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    LOXHD1 lipoxygenase homology PLAT domains 1 [ Catharus ustulatus (Swainson's thrush) ]

    Gene ID: 117010547, updated on 3-Aug-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOXHD1
    Gene description
    lipoxygenase homology PLAT domains 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Catharus ustulatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Turdidae; Catharus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOXHD1 in Genome Data Viewer
    Location:
    chromosome: Z
    Exon count:
    40
    Annotation release Status Assembly Chr Location
    101 current bCatUst1.pri.v2 (GCF_009819885.2) Z NC_046262.2 (2451852..2585818)
    100 previous assembly bCatUst1.pri (GCF_009819885.1) Z NC_046262.1 (2509267..2585818)

    Chromosome Z - NC_046262.2Genomic Context describing neighboring genes Neighboring gene protein inhibitor of activated STAT 2 Neighboring gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 Neighboring gene arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C Neighboring gene arkadia (RNF111) N-terminal like PKA signaling regulator 2N

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    lipoxygenase homology domain-containing protein 1
    Names
    lipoxygenase homology domains 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Catharus ustulatus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bCatUst1.pri.v2

    Genomic

    1. NC_046262.2 Reference bCatUst1.pri.v2

      Range
      2451852..2585818
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_033085064.2 → XP_032940955.2  lipoxygenase homology domain-containing protein 1

      UniProtKB/TrEMBL
      A0A8C3Y5R9
      Conserved Domains (2) summary
      cd01756
      Location:836 → 956
      PLAT_repeat; PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
      cl00011
      Location:1824 → 1929
      PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.