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    RAPH1 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 [ Lagopus leucura (white-tailed ptarmigan) ]

    Gene ID: 122181674, updated on 22-Mar-2024

    Summary

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    Gene symbol
    RAPH1
    Gene description
    Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lagopus leucura
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Tetraoninae; Lagopus
    Orthologs
    human mouse all
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    Genomic context

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    See RAPH1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    100 current USGS_WTPT01 (GCF_019238085.1) Unplaced Scaffold NW_024962267.1 (8436659..8521030, complement)

    NW_024962267.1Genomic Context describing neighboring genes Neighboring gene alpha-aspartyl dipeptidase-like Neighboring gene cytochrome P450 20A1 Neighboring gene abl interactor 2 Neighboring gene uncharacterized LOC122181982 Neighboring gene CD28 molecule

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024962267 Unplaced Scaffold Reference USGS_WTPT01

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ras-associated and pleckstrin homology domains-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lagopus leucura Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USGS_WTPT01

    Genomic

    1. NW_024962267.1 Reference USGS_WTPT01

      Range
      8436659..8521030 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042874260.1 → XP_042730194.1  ras-associated and pleckstrin homology domains-containing protein 1 isoform X1

      Conserved Domains (3) summary
      cd01259
      Location:396 → 518
      PH_APBB1IP; Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein pleckstrin homology (PH) domain
      cd16136
      Location:271 → 360
      RA_MRL_Lpd; Ras-associating (RA) domain found in the adapter protein lamellipodin (Lpd)
      pfam08580
      Location:1100 → 1244
      KAR9; Yeast cortical protein KAR9

    2. XM_042874262.1 → XP_042730196.1  ras-associated and pleckstrin homology domains-containing protein 1 isoform X1

      Conserved Domains (3) summary
      cd01259
      Location:396 → 518
      PH_APBB1IP; Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein pleckstrin homology (PH) domain
      cd16136
      Location:271 → 360
      RA_MRL_Lpd; Ras-associating (RA) domain found in the adapter protein lamellipodin (Lpd)
      pfam08580
      Location:1100 → 1244
      KAR9; Yeast cortical protein KAR9

    3. XM_042874261.1 → XP_042730195.1  ras-associated and pleckstrin homology domains-containing protein 1 isoform X1

      Conserved Domains (3) summary
      cd01259
      Location:396 → 518
      PH_APBB1IP; Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein pleckstrin homology (PH) domain
      cd16136
      Location:271 → 360
      RA_MRL_Lpd; Ras-associating (RA) domain found in the adapter protein lamellipodin (Lpd)
      pfam08580
      Location:1100 → 1244
      KAR9; Yeast cortical protein KAR9

    4. XM_042874264.1 → XP_042730198.1  ras-associated and pleckstrin homology domains-containing protein 1 isoform X2

      Conserved Domains (2) summary
      cd01259
      Location:421 → 543
      PH_APBB1IP; Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein pleckstrin homology (PH) domain
      cd16136
      Location:296 → 385
      RA_MRL_Lpd; Ras-associating (RA) domain found in the adapter protein lamellipodin (Lpd)

    5. XM_042874263.1 → XP_042730197.1  ras-associated and pleckstrin homology domains-containing protein 1 isoform X2

      Conserved Domains (2) summary
      cd01259
      Location:421 → 543
      PH_APBB1IP; Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein pleckstrin homology (PH) domain
      cd16136
      Location:296 → 385
      RA_MRL_Lpd; Ras-associating (RA) domain found in the adapter protein lamellipodin (Lpd)

    RNA

    1. XR_006179540.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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